Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2503g00016 ATGGGACGCGGAAAGATTGAGATCAAGAGGATCCAGAACACCACAACAAGGCAAGTCACCTTCTCCAAGCGAAGAACGGGTCTCATGAAGAAGACTCGTGAGCTTTCTGTGCTCTGCGATGCAGAGATTGGGCTTATCATCTTCTCCAGCACTGGGAAGATGTTTCAGTACTGCACTGAACCCTTGAGGATGGAACAGATGATAGAAAAGTATCAGAGATCCACAGGAACTAGCATTGTGGAACATGATCACCCCCGGCAAGAATTACTCCATGACGTGGCAATGCTCAGGCAAGAAACTCTACGTCTTGAATTGGGAATTCAACGCTATCTTGGAGAGGATATGAGCTGCTTAAAATTTGAGGACTTGACGAAACTTGAAGAAGACTTAGAGAGCTCTGTCGCCAAAGTTCGAAATCGACAGAATGAGCTCTTACAACAGCAAATCGAGAATCTTCGCAGGAAGGAAAGAATCTTGGAAGAAGAAAACAGCAATTTGACCAATTGGATTCAGGAGCACCGAACAATGTTTGAGTTTCAGAAAGCAGCAGTGGAAGCAAATAAACCAGTGCAACATCAGCAAGTAATGGATCACTTCCCTTTCTTTGAAGAACAACCTACTAGTACCTTCCTTCAACTTGCTGCCCCTGCATTTCCACACCTTCACCCATATCTTCAGTTGGCGCAGCCCAATATTCATGACTCAGTCAGGGCCCCAGAGCCACAAAATTAA 732 0.4522 MGRGKIEIKRIQNTTTRQVTFSKRRTGLMKKTRELSVLCDAEIGLIIFSSTGKMFQYCTEPLRMEQMIEKYQRSTGTSIVEHDHPRQELLHDVAMLRQETLRLELGIQRYLGEDMSCLKFEDLTKLEEDLESSVAKVRNRQNELLQQQIENLRRKERILEEENSNLTNWIQEHRTMFEFQKAAVEANKPVQHQQVMDHFPFFEEQPTSTFLQLAAPAFPHLHPYLQLAQPNIHDSVRAPEPQN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2503g00016 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Gabi2503g00016 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gabi2503g00016 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2503g00016 243 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2503g00016 243 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gabi2503g00016 243 Coils Coil 123 172 - -
Gabi2503g00016 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2503g00016 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Gabi2503g00016 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2503g00016 Gabi-Chr2503 267880 270976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2503g00016 1 243 MADS-box Gene Family AT5G23260 47.059 9.67e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2503g00016 K-box 9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2503g00016 - - gmx:102667157 338.961