Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2503g00008 ATGGAGTCAGATCTTCAGCAACAGCCGCAGATAAATTCTTCAGGTTTGACACGGTACCGATCAGCACCAAGTTCGTATTTTACAGATATCATTGACCGAGAGTTCTACGAGCACATTTTTAATCGCCCATCGAGCCCTGAAACAGAGCGAGTTTTCTCACGCTTTATGAATAGTCTAGGTAGTGATGGTGCAGCAGCTGAAGAAGATTCACTCACTCAAAAACTCTCACCACCTGATTCTGCAGTGAAGGAAGAGATTAACCAGCAGGGTGAGGCTATGCCCTCCATCAACAGTGACCACATGATTCTTCAGCAGAACAATATCAATAATTTTTACCAAAGTTCATCGAGACCACCTTTGCCAAATCAAAGCCTTCCCGCAAATATTGAAGGAACGTATTCAATGGGAGTTAATCGGTTGCCGGAGATGAAGGTTGGTGGTGGAACTGGAAATAATTCTAATCTTATTAGGCATAGTAGTTCACCAGCAGGACTATTTTCCCAAATCAACATTGAAAATGGCTATGCTGGTATGAGTGGCATGGGAACTTTAGGAGCTGTTAATAACCCTATTGAAGAATCAAAATTTTCTACTGCAAAGAGGTTGAAGAACCCACCAAACTACTCATCAGGGAGAATGTCTTCAATAGCTGACATTGGGGACAAATTAGGCAATGGAGAAAATAATCAAGACAGTGAAGCTTTTGCTGAAAGCCATGGTAACGATTTTATGACAGGTTTCTCGGTTGATCCCTGGGATGATTCTCCGGTGATGTCTGACAATGTTAGCGGTCTAAAAAGATTTAGAGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCCGAGACTCAGTCTCATGCTCCTTTGGTTCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTCCCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTCGTCCCAAACATGGACAAGCAAACAAACACAGCCGACATGTTGGACTTGGCTGTGGATTATATCAAAGACCTTCAAAAGCAAGTTCAGGTATTCCAAAAAACAGACCTATCTCAATTCTCAACAATATCAATATGCCATTTATTATTATGA 1206 0.4187 MESDLQQQPQINSSGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLGSDGAAAEEDSLTQKLSPPDSAVKEEINQQGEAMPSINSDHMILQQNNINNFYQSSSRPPLPNQSLPANIEGTYSMGVNRLPEMKVGGGTGNNSNLIRHSSSPAGLFSQINIENGYAGMSGMGTLGAVNNPIEESKFSTAKRLKNPPNYSSGRMSSIADIGDKLGNGENNQDSEAFAESHGNDFMTGFSVDPWDDSPVMSDNVSGLKRFRDNDAKPFSGLNAAETQSHAPLVHQLSLPNTSAEMAAIEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQVFQKTDLSQFSTISICHLLL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2503g00008 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 376 IPR011598 GO:0046983
Gabi2503g00008 401 FunFam Transcription factor bHLH130 family 327 393 - -
Gabi2503g00008 401 SMART finulus 332 382 IPR011598 GO:0046983
Gabi2503g00008 401 Gene3D - 327 393 IPR036638 GO:0046983
Gabi2503g00008 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 385 IPR036638 GO:0046983
Gabi2503g00008 401 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 385 - -
Gabi2503g00008 401 Pfam Helix-loop-helix DNA-binding domain 331 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2503g00008 Gabi-Chr2503 141313 144419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2503g00008 1 386 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.915 6.79e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2503g00008 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2503g00008 - - gmx:100805812 526.554