Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2503g00007 ATGGAGTCAGATCTTCAGCAACAGCCGCAGATAAATTCTTCAGGTTTGACACGGTACCGATCAGCACCAAGTTCGTATTTTACAGATATCATTGACCGAGAGTTCTACGAGCACATTTTTAATCGCCCATCGAGCCCTGAAACAGAGCGAGTTTTCTCACGCTTTATGAATAGTCTAGGTAGTGATGGTGCAGCAGCTGAAGAAGATTCACTCACTCAAAAACTCTCACCACCTGATTCTGCAGTGAAGGAAGAGATTAACCAGCAGGGTGAGGCTATGCCCTCCATCAACAGTGACCACATGATTCTTCAGCAGAACAATATCAATAATTTTTACCAAAGTTCATCGAGACCACCTTTGCCAAATCAAAGCCTTCCCGCAAATATTGAAGGAACGTATTCAATGGGAGTTAATCGGTTGCCGGAGATGAAGGTTGGTGGTGGAACTGGAAATAATTCTAATCTTATTAGGCATAGTAGTTCACCAGCAGGACTATTTTCCCAAATCAACATTGAAAATGGCTATGCTGGTATGAGTGGCATGGGAACTTTAGGAGCTGTTAATAACCCTATTGAAGAATCAAAATTTTCTACTGCAAAGAGGTTGAAGAACCCACCAAACTACTCATCAGGGAGAATGTCTTCAATAGCTGACATTGGGGACAAATTAGGCAATGGAGAAAATAATCAAGACAGTGAAGCTTTTGCTGAAAGCCATGGTAACGATTTTATGACAGGTTTCTCGGTTGATCCCTGGGATGATTCTCCGGTGATGTCTGACAATGTTAGCGGTCTAAAAAGATTTAGAGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCCGAGACTCAGAATGAAACTGGTGGACAGTCTCATGCTCCTTTGGTTCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTCCCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTCGTCCCAAACATGGACAAGCAAACAAACACAGCCGACATGTTGGACTTGGCTGTGGATTATATCAAAGACCTTCAAAAGCAAGTTCAGGTATTCCAAAAAACAGACCTATCTCAATTCTCAACAATATCAATATGCCATTTATTATTATGA 1224 0.4191 MESDLQQQPQINSSGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLGSDGAAAEEDSLTQKLSPPDSAVKEEINQQGEAMPSINSDHMILQQNNINNFYQSSSRPPLPNQSLPANIEGTYSMGVNRLPEMKVGGGTGNNSNLIRHSSSPAGLFSQINIENGYAGMSGMGTLGAVNNPIEESKFSTAKRLKNPPNYSSGRMSSIADIGDKLGNGENNQDSEAFAESHGNDFMTGFSVDPWDDSPVMSDNVSGLKRFRDNDAKPFSGLNAAETQNETGGQSHAPLVHQLSLPNTSAEMAAIEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQVFQKTDLSQFSTISICHLLL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2503g00007 407 SMART finulus 338 388 IPR011598 GO:0046983
Gabi2503g00007 407 FunFam Transcription factor bHLH130 family 333 399 - -
Gabi2503g00007 407 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Gabi2503g00007 407 Gene3D - 333 399 IPR036638 GO:0046983
Gabi2503g00007 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
Gabi2503g00007 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 391 - -
Gabi2503g00007 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 391 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2503g00007 Gabi-Chr2503 141313 144419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2503g00007 1 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.318 4.49e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2503g00007 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2503g00007 - - gmx:100805812 538.495