Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2503g00006 ATGGAGTCAGATCTTCAGCAACAGCCGCAGATAAATTCTTCAGGTTTGACACGGTACCGATCAGCACCAAGTTCGTATTTTACAGATATCATTGACCGAGAGTTCTACGAGCACATTTTTAATCGCCCATCGAGCCCTGAAACAGAGCGAGTTTTCTCACGCTTTATGAATAGTCTAGGTAGTGATGGTGCAGCAGCTGAAGAAGATTCACTCACTCAAAAACTCTCACCACCTGATTCTGCAGTGAAGGAAGAGATTAACCAGCAGGGTGAGGCTATGCCCTCCATCAACAGTGACCACATGATTCTTCAGCAGAACAATATCAATAATTTTTACCAAAGTTCATCGAGACCACCTTTGCCAAATCAAAGCCTTCCCGCAAATATTGAAGGAACGTATTCAATGGGAGTTAATCGGTTGCCGGAGATGAAGGTTGGTGGTGGAACTGGAAATAATTCTAATCTTATTAGGCATAGTAGTTCACCAGCAGGACTATTTTCCCAAATCAACATTGAAAATGGCTATGCTGGTATGAGTGGCATGGGAACTTTAGGAGCTGTTAATAACCCTATTGAAGAATCAAAATTTTCTACTGCAAAGAGGTTGAAGAACCCACCAAACTACTCATCAGGGAGAATGTCTTCAATAGCTGACATTGGGGACAAATTAGGCAATGGAGAAAATAATCAAGACAGTGAAGCTTTTGCTGAAAGCCATGGTAACGATTTTATGACAGGTTTCTCGGTTGATCCCTGGGATGATTCTCCGGTGATGTCTGACAATGTTAGCGGTCTAAAAAGATTTAGAGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCCGAGACTCAGAATGAAACTGGTGGACAGTCTCATGCTCCTTTGGTTCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTCCCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTCGTCCCAAACATGGACAAGCAAACAAACACAGCCGACATGTTGGACTTGGCTGTGGATTATATCAAAGACCTTCAAAAGCAAGTTCAGACGCTTTCGGATTGTCAATCTAAGTGTACGTGTTCACAAAAGCTGGAACAATAA 1215 0.4255 MESDLQQQPQINSSGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLGSDGAAAEEDSLTQKLSPPDSAVKEEINQQGEAMPSINSDHMILQQNNINNFYQSSSRPPLPNQSLPANIEGTYSMGVNRLPEMKVGGGTGNNSNLIRHSSSPAGLFSQINIENGYAGMSGMGTLGAVNNPIEESKFSTAKRLKNPPNYSSGRMSSIADIGDKLGNGENNQDSEAFAESHGNDFMTGFSVDPWDDSPVMSDNVSGLKRFRDNDAKPFSGLNAAETQNETGGQSHAPLVHQLSLPNTSAEMAAIEKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDCQSKCTCSQKLEQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2503g00006 404 SMART finulus 338 388 IPR011598 GO:0046983
Gabi2503g00006 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 394 IPR036638 GO:0046983
Gabi2503g00006 404 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2503g00006 404 FunFam Transcription factor bHLH130 family 333 401 - -
Gabi2503g00006 404 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Gabi2503g00006 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 396 - -
Gabi2503g00006 404 Gene3D - 333 404 IPR036638 GO:0046983
Gabi2503g00006 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 382 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2503g00006 Gabi-Chr2503 141313 144890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2503g00006 1 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.621 4.56e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2503g00006 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2503g00006 - - gmx:100805812 563.148