Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2503g00004 ATGAATGTTGCCACAACAATCATGGATTCTTCTGTTGTCTTGGGTAGCACGATTTTGGAGCCTCATAATGATCTGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCCAAGTCTGCAGGGTTCGGTACTGCTAAGTTGAGCAGTCGTCGGTCTAGGGCATCAAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGCAAGGCAAGCATGCATGTGAAGAGAAGACAGGATGGTAAGTGGTATGTCTACAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGCCACAGGAGTTCTGATCCACTAAGTAATGATGTTAGGATGCGCAGGCGGAAGAACTCAACTGCAGTTTCTAAACTATTTAGTGCATATCAGAATGTTGATTGTTTAGAGAACTTTATGAAACATCAACATGATAAAGGGCGAAGTTTGGTTTTAGAAGCAGGGCATGCCCAATTGCTTCTTGAACTCTTCATGCGCATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGACTGAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTCCTTACTTTTCTGATGTTGTTTCTTTTGACACAACATATTTTACCAGCAAGTATAAAATACCATTGGTACTTTTCATTGGGGTAAACCATCATATTCAACCAATATTGCTTGGTTGTGCATTGATTGCTGATGAGACCATATATACTTTTGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGAGAACGAGTTCCACAAGTGATTCTCAGTGACCAAAATGAGGCTATTAAAGCAGCTGTTGCCGCTGTTCTTCCTGGAACACGTCATTGCTTTTGTTTGTGGCATGTTTTGGAAAAGATTCCCAAACAGCTTGAATTTTTAAGCACATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATATAAATCATGGACAGAGGAGCAATTTGAAAAGAGATGGTCGAAGTTAGTTGACAGGTTTAACCTTAGAGATGTTGAGTGGGTCCAATCCTTGTATGATGACCGTACGTGTTGGGTGCCAATTTTTATGAGAGATATTTCTTTTGCTGGCCTGTCTACTAGTTCACGCTCAGAAAGTTTAAATTCTTTGTTTGACAACTATGTCCAAGTTGATACTTCATTGAGAGAATTTATAGAACGGTACAGAGTGATTCTTGAAGATAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGTTATTAGTTTACACACATGAGATTTATAAAAAGTTCCAGATTGAGGTTTTGGGTGCAGCTGCTTGCCATCTGAAGAAAGAAAATGATGGCATGACTACCACTTATAGTGTGAAGGACTTTGAAAATAATCAAAACTACATGGTAGAATGGAACACATCAAACTCAGATATATATTGTTCATGTCACTTGTTTGAATATAAAGGTTATCTCTGTAGACATGCTATTGTTGTTTTACAAATGTCAGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCCAAGATTCGGCGATTCAATGATTTATGTAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTGTCACAAGAAAGTTACTATATTGCTTTAGGTGCCATAAGTGAAGCTCTACAGCAATGTGCAAATTTGAACAACTCTGTTGAGAATGGTACAAGGCCTGATGCCTTAGCTACCCATGTTGTTTGCAATGTTGAACAAGAGTATCAATCTATTATTACATCTAACAGTAAGGTCCCTGATCCAAAAATGAATACTGGTAATAAGGCTGGGAGGACTGTTGCGGCTGGTAGGAGTCTAGGAAGTGCAGAAAATAGTGAAGGAAATAAAGGAAAGGTACCTCAGCTTGAAGCAGTGACTGGGAAAGATGGTTTTCAACAAATGTTTCACAGTATGGTGCCGGTGCAGGCGCTGTTCCATAATGTTTCGTCGACACCGTATCATACCGCTGCTTCGACTCATTTGCATGAGAATCGTCTTTCTCGTTAG 2229 0.389 MNVATTIMDSSVVLGSTILEPHNDLEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSTAVSKLFSAYQNVDCLENFMKHQHDKGRSLVLEAGHAQLLLELFMRMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFPYFSDVVSFDTTYFTSKYKIPLVLFIGVNHHIQPILLGCALIADETIYTFAWLLQTWLIAMGERVPQVILSDQNEAIKAAVAAVLPGTRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIYKSWTEEQFEKRWSKLVDRFNLRDVEWVQSLYDDRTCWVPIFMRDISFAGLSTSSRSESLNSLFDNYVQVDTSLREFIERYRVILEDRHEEEAKANFDAWHETPELKSPSPFEKQMLLVYTHEIYKKFQIEVLGAAACHLKKENDGMTTTYSVKDFENNQNYMVEWNTSNSDIYCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEEVQSKIRRFNDLCRRAIILGEEGSLSQESYYIALGAISEALQQCANLNNSVENGTRPDALATHVVCNVEQEYQSIITSNSKVPDPKMNTGNKAGRTVAAGRSLGSAENSEGNKGKVPQLEAVTGKDGFQQMFHSMVPVQALFHNVSSTPYHTAASTHLHENRLSR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2503g00004 742 Pfam FAR1 DNA-binding domain 36 121 IPR004330 -
Gabi2503g00004 742 Pfam SWIM zinc finger 519 547 IPR007527 GO:0008270
Gabi2503g00004 742 MobiDBLite consensus disorder prediction 656 691 - -
Gabi2503g00004 742 Pfam MULE transposase domain 234 327 IPR018289 -
Gabi2503g00004 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 622 IPR031052 GO:0006355
Gabi2503g00004 742 SMART 26again6 524 551 IPR006564 GO:0008270
Gabi2503g00004 742 ProSiteProfiles Zinc finger SWIM-type profile. 513 549 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2503g00004 Gabi-Chr2503 105904 110551 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi2503g00004 MULE 5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2503g00004 - - gmx:100805273 1335.86