LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2503g00001	ATGGATTCAGCAATTCCACCGTCGACGGCGGCGGAGCTGGACCTGAACAACCTGAAAGCACTGAAAGTTGTGGGCAAAGGTGCCATGGGCACCGTGTTCTTAGTTCAAGACCAAGACGACTCCTCTGGACGCAGCCCGTGGGCAGTTAAGGTGGTAGAGAAATCATCCACGGAAGCTGACCGTCGTGCCCGTTGGGAAATCCACGTCCTATCCCGTTTGTCGCATCCCTTTCTTCCTTCCCTTATCGGCACCTTTGAATCCGATCAATTGTTGGGCTGGGCCCTACCTTACTGTCCCGGCGGCGATCTCAACGTCCTCCGTTACCGCCAAACAGATCGTGTCTTCTCCCCCGCCGTCATCCGTTTCTACCTGGCAGAGATCGTCTGCGCTCTAGACCACCTTCATAGCATGGGCATCGCCTATCGCGACTTAAAGCCCGAAAATGTCCTCATTCAACAATCCGGCCACGTCACCCTCACTGACTTCGATCTCTCCCGCAACCTCACACACAAAACCGTCAAAACCGTCATTTTTCTAGAAGATTCCAAATCTCCGGAAATTACTCGCCGGAACTTCCCTAACTGGATCGACACTAACATAATGGGCTTGAAGAAGGCCAAGTCCTCCCGAGTCAGCCCCGTGAGTCGACGAAAGCTGAGTTTCTCCAACGGCGAACGGTCCAACTCGTTCGTCGGCACGGAGGAGTACGTCGCGCCTGAGGTTGTCCGCGGCGACGGACATGAGTTCGCCGTTGACTGGTGGGCCCTGGGGATACTTACGTATGAGATGTTGTACGGTGCGACGCCGTTCAAGGGTAAGAACCGCAAGGAAACGTTTCGAAACGTGCTGTTGAAGGAGCCGGAATTCGTTGGGAAGAAAACGGAGTTAACGGACCTGATTTCGCGGTTGCTCGAAAAGGACCCAACAAAGCGTTTGGGTTACGTTCGAGGCGTCAGCGAGATCAAGGAGCACCAGTTCTTCAGAGGGGTCAAGTGGGACCTACTCACCCTGGTCGTACGACCACCCTTCATTCCGTCAAGAGACGACGCTGACTTGGCGGCGGAGCAATTCACCTCCGGAGTGGACATAAGGGACTACTTCCGGAACTTGAAATCGCCGCCGTCGTTGCCGCCTTCTCCGTTGCCGTCACCGTCTTCTGAGTTTCAGAGGAATGTTTCTTTAGCTGAATTCTGA	1194	0.5452	MDSAIPPSTAAELDLNNLKALKVVGKGAMGTVFLVQDQDDSSGRSPWAVKVVEKSSTEADRRARWEIHVLSRLSHPFLPSLIGTFESDQLLGWALPYCPGGDLNVLRYRQTDRVFSPAVIRFYLAEIVCALDHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRNLTHKTVKTVIFLEDSKSPEITRRNFPNWIDTNIMGLKKAKSSRVSPVSRRKLSFSNGERSNSFVGTEEYVAPEVVRGDGHEFAVDWWALGILTYEMLYGATPFKGKNRKETFRNVLLKEPEFVGKKTELTDLISRLLEKDPTKRLGYVRGVSEIKEHQFFRGVKWDLLTLVVRPPFIPSRDDADLAAEQFTSGVDIRDYFRNLKSPPSLPPSPLPSPSSEFQRNVSLAEF	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2503g00001	397	FunFam	Serine/threonine-protein kinase OXI1	102	170	-	-
	Gabi2503g00001	397	FunFam	Serine/threonine-protein kinase OXI1	225	346	-	-
	Gabi2503g00001	397	SUPERFAMILY	Protein kinase-like (PK-like)	15	386	IPR011009	-
	Gabi2503g00001	397	ProSiteProfiles	Protein kinase domain profile.	18	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2503g00001	397	ProSiteProfiles	AGC-kinase C-terminal domain profile.	328	397	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Gabi2503g00001	397	Gene3D	Transferase(Phosphotransferase) domain 1	224	346	-	-
	Gabi2503g00001	397	SMART	serkin_6	18	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2503g00001	397	Gene3D	Phosphorylase Kinase; domain 1	18	101	-	-
	Gabi2503g00001	397	ProSitePatterns	Protein kinases ATP-binding region signature.	24	50	IPR017441	GO:0005524
	Gabi2503g00001	397	PANTHER	FLIPPASE KINASE 1-RELATED	12	351	-	-
	Gabi2503g00001	397	Gene3D	Transferase(Phosphotransferase) domain 1	102	190	-	-
	Gabi2503g00001	397	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Gabi2503g00001	397	Pfam	Protein kinase domain	222	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2503g00001	397	Pfam	Protein kinase domain	20	190	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2503g00001	Gabi-Chr2503	37788	39345	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2503g00001	13	397	AGC Kinase Gene Family	AT3G20830	62.095	2.32e-167	473

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Gabi2503g00001		Pkinase	5.9e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2503g00001	-		K08286	qsa:O6P43_028132	556.214