Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi24g00002 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAAGACGATGAGGGGTTCGACTCCTACCGGAAAGGAGGGTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGAGGAAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGTCAGTTTTCCACTGTGTGGCTTGCTTATGATACTAGCACCTCTGTATGTTTGATCCTCTCTCTTCTCTTTATCATTTGTGTTCTTGCAGCACAATTTGCCCAGGCTGCCCTTCATGAGATGGATGTTCTTTCATCCATTGCTGATGGTGCCCCTTTGAATTCGAAGTTTGTTGTCCAATTGATTGACCACTTTAAGCACACAGGCCCTAATGGCCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGAGATAGCTTGCTTCGACTAATCAAATATAACCATTACAAAGGCCTTCCATTGAATAAAGTTAGGGAGATGTGCAAATGCATTTTGATTGGTTTGGATTACTTACATAGAGAACATGGTATTATCCACACGGACCTAAAACCAGAAAATGTTCTTCTAGTTTCTACCATTGATCCTGGAAAGGACCCTGTTAGATCTGGACTCACCCCAATTTTAGAGAGGCCTGAGGGAAACATAAATGGTGGAGTTTCAAGTCTTGTTGAGAAAAAGTTGAAAAGGAGAGCAAGGAGGGCAGTTGCTAAAATATCTGGAAAAACAGCTTCATTTGGAGGAACAGGAGAAGCTCCAAAGACTGATAGAAATATCGATGGGATTGATGTGAGATGCAAAGTGGTAGATTTTGGAAACGCATGTTGGGCTGATAAGCAATTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATATTGCAGGCTGGTTATTCCTTCTCAGTAGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACAGGTGATATGTTGTTTACTCCCAAGGATGGAGAAGGTTTTTCTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTCGGAAAGATGCCTCGGAAGATTGCTATTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGGGATCTCAAAAGAATTCGAAGGCTAAAATTTTGGCCACTTAACAAACTGTTGATTGATAGATATAAATTTTCGGAGAGTGATGCTCACGAGTTATCAGAGTTTATTTTGCCACTTCTTGATTTTGCACCTGAGAATCGACCAACTGCACAGCAGTGCCTGCAACACCCATGGCTTAAGGGTAAGGAGACTCCAAATGAAATGAAAAATGAGTCTAGTGTGGAATAG 1302 0.4339 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSVCLILSLLFIICVLAAQFAQAALHEMDVLSSIADGAPLNSKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNHYKGLPLNKVREMCKCILIGLDYLHREHGIIHTDLKPENVLLVSTIDPGKDPVRSGLTPILERPEGNINGGVSSLVEKKLKRRARRAVAKISGKTASFGGTGEAPKTDRNIDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKDGEGFSEDEDHLALMMELLGKMPRKIAIAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFSESDAHELSEFILPLLDFAPENRPTAQQCLQHPWLKGKETPNEMKNESSVE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi24g00002 433 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 239 427 - -
Gabi24g00002 433 Gene3D Phosphorylase Kinase; domain 1 24 127 - -
Gabi24g00002 433 Gene3D Transferase(Phosphotransferase) domain 1 96 417 - -
Gabi24g00002 433 SUPERFAMILY Protein kinase-like (PK-like) 32 423 IPR011009 -
Gabi24g00002 433 SMART serkin_6 38 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi24g00002 433 FunFam Serine/threonine-protein kinase SRPK 121 417 - -
Gabi24g00002 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gabi24g00002 433 ProSiteProfiles Protein kinase domain profile. 38 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi24g00002 433 Pfam Protein kinase domain 256 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi24g00002 433 Pfam Protein kinase domain 40 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi24g00002 Gabi-Chr24 65920 71181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi24g00002 4 431 EF-hand Containing Proteins AT5G22840 48.958 2.16e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gabi24g00002 Pkinase 4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi24g00002 K08832 - gmx:100814976 740.725