Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2497g00006 ATGTCTACTTCTGTTAGTCAAGAATCTGAGTCAGCGCCGCCACAGATCTACTCCCGAAAAGACAAGTCTCTCGGATTGCTTTGCTCCAACTTCTTGAAGTTGTACAATCGCGAAGGAAGTGAGATGATTGAACTCGACGATGCTGCTGCCCGACTAGGTGTTCAGCGTCGCCGCATGTATGATGTAGTCAACATTTTGGAGAGCGTTGGGATTGTAGCAAGAAAAGCTAGGAACATATATTCATGGAAAGGTTTCAAAGAGATTCCTCGGGCTTTAGAAGAGCTCAAGGAGGAGGTTCAGAGAGAAAATTTAGATGCAGCATACTATCCACATATCCACTCAAAGAATGCGACAGAGGCTTTGAATAACAAAGAAAATGGTGGGTCTGAAATTGATACCAAGAACAATCCCTTGGCATCATTTCAAACTGATTGCAGAAGAGACAAATCGCTTGCATTTCTGACACAGAATTTTATAAAGCTTTTCCTTTTTTCAGATGTGGAGTTAGTTTTGCTTGAAGATGCTGCAACAAAAATGCCAGGCGATTCCCGGAATTCAATTGCTCTCAGAACAAAAATCAGACGCCTATATGATATCGCCAATGTCCTTTCCACCATCAATCTGATTGAGAAGACTAATAGTCCTGGGCATAGGAAAACAGCATATAGGTGGTTGGGATGGAAAGCCATTACAGGATCTGATGATGCTTTGGATAAGAATGCTTCCAAGAAAAGAGTGTTTGGAGCTGAAATTACGAATTGTAGTTTAAAGAGGAATAAAGCAGATTCTTTAATGGATCCGGATTTTCAAAAGAAAAGGTCATACGTTTATAATAAGGCACATGACTTGGAAAACACTTACAATGATGGAATCTTGAAGCAGCAACCCAGTGGCTATTCAAAAGCCGTAGATTTTGGTCCTTTTGCCCCCAACAAATTTTAA 942 0.4076 MSTSVSQESESAPPQIYSRKDKSLGLLCSNFLKLYNREGSEMIELDDAAARLGVQRRRMYDVVNILESVGIVARKARNIYSWKGFKEIPRALEELKEEVQRENLDAAYYPHIHSKNATEALNNKENGGSEIDTKNNPLASFQTDCRRDKSLAFLTQNFIKLFLFSDVELVLLEDAATKMPGDSRNSIALRTKIRRLYDIANVLSTINLIEKTNSPGHRKTAYRWLGWKAITGSDDALDKNASKKRVFGAEITNCSLKRNKADSLMDPDFQKKRSYVYNKAHDLENTYNDGILKQQPSGYSKAVDFGPFAPNKF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2497g00006 313 SUPERFAMILY "Winged helix" DNA-binding domain 148 227 IPR036390 -
Gabi2497g00006 313 FunFam E2F transcription factor-like E2FE 141 228 - -
Gabi2497g00006 313 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Gabi2497g00006 313 Pfam E2F/DP family winged-helix DNA-binding domain 148 226 IPR003316 GO:0005667|GO:0006355
Gabi2497g00006 313 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Gabi2497g00006 313 PANTHER TRANSCRIPTION FACTOR E2F 9 277 IPR015633 GO:0000978|GO:0006357
Gabi2497g00006 313 Gene3D - 141 228 IPR036388 -
Gabi2497g00006 313 Gene3D - 13 86 IPR036388 -
Gabi2497g00006 313 FunFam E2F transcription factor 8 14 86 - -
Gabi2497g00006 313 SMART E2F_TDP_2 146 226 IPR003316 GO:0005667|GO:0006355
Gabi2497g00006 313 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2497g00006 Gabi-Chr2497 171567 173912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2497g00006 5 310 E2F-DP Transcription Factor Family AT3G01330 50.980 1.95e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi2497g00006 E2F_TDP 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2497g00006 - - lang:109346387 416.772