Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2493g00024 ATGTTGCAAATTGATATGGAAAACTCTGAACTCTTCCAATTCCTTTCCCGCACCAACGGGTCCTTTTTCCACAATACACCACACAGCTTTTGTAGTTCCTCTAACTATCACCCCTTGGAGGTTTCTGAAATTACAGACATACCCTCCCAACAGGATAGAGCCCTTGCTGCTATGAAGAACCACAAAGAAGCTGAGAAGAGAAGGAGGGAGAGAATCAATTCCCACCTTGATGAGCTTCGCACTCTTCTCCCTTGTAACTCTAAGACAGATAAGGCTTCACTTCTTGCAAAGGTTGTCCAGAGAGTGAAAGAGCTGAAGCAACAAACATCAGAAATCACCGAACTCGAAACCATTCCATCGGAGACCGACGAGATCACCGTCCTCTCCGCCGGCTGCGGCGGAGGAGACGGGAAGCTGATATTCAAGGCTTCTCTATGCTGCGAGGACCGCTCCGACCTCATCCCTGACCTCATAGAAATCCTAAAGTCTCTTCATCTGAAAACCCTGAAAGCAGAAATGGCAACTTTAGGAGGAAGAACACGCAACGTTCTCATCGTTGCTGCTGATAAAGACCACAGCATTGAATCAATCCATTTCCTTCAGAACTCGCTCAAGTCTTTGCTGGATCGATCAACTTCTAGTGAAAGATCAAAACGACGCCGTGGGTTAGACCGAAGATTAATGGCTTAA 690 0.4667 MLQIDMENSELFQFLSRTNGSFFHNTPHSFCSSSNYHPLEVSEITDIPSQQDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETIPSETDEITVLSAGCGGGDGKLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAADKDHSIESIHFLQNSLKSLLDRSTSSERSKRRRGLDRRLMA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2493g00024 229 SMART finulus 62 111 IPR011598 GO:0046983
Gabi2493g00024 229 CDD bHLH_AtAIG1_like 51 127 - -
Gabi2493g00024 229 Gene3D - 51 117 IPR036638 GO:0046983
Gabi2493g00024 229 Pfam Helix-loop-helix DNA-binding domain 60 105 IPR011598 GO:0046983
Gabi2493g00024 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Gabi2493g00024 229 FunFam transcription factor bHLH30 51 114 - -
Gabi2493g00024 229 PANTHER TRANSCRIPTION FACTOR BHLH30 47 222 IPR045847 GO:0003700|GO:0006355
Gabi2493g00024 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 116 IPR036638 GO:0046983
Gabi2493g00024 229 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2493g00024 Gabi-Chr2493 295176 296792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2493g00024 2 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 59.211 2.92e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2493g00024 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2493g00024 - - gmx:100802566 318.546