Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2493g00017 ATGGGACTCTGTCATGGAAAACCCATTGAAACCTCAAAAACTGAAGGAGAAAACTCAGTAGTATTCAATGGTGACAAAGAGGTGCTGGCACTTCCACCAAGTTCCCACAGCACCAAATCCTCAAAGTTTCCATTTTACAGCCCTAGCCCCTTGCCAAGTCTCTTCAAGAACTCACCGGCGAATTCGAGCGTGAGCTCAACCCCTTTGCGGATCTTCAAGCGCCCCTTCCCTCCTCCTTCGCCGGCCAAGCACATTCGGGCGCTGCTAGCTCGCCGCCATGGTTCGGTGAAGCCTAATGAGGCCTCCATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTTGGGTTCTCTAAGCACTTTGAAGCTCATTATGTGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGTTACACTTGCTCTGCCAAGGGGAAAAAGGGTAGCTTCAAGGGCCATGAGGTTGCTGTCAAAGTCATTCCAAAATCAAAGATGACAACAGCAATTGCTATAGAGGATGTAAGAAGAGAAGTAAAGATATTGCGGGCTCTCACTGGCCATAAGAATCTGGTGCAATTTTATGAAGCCTATGAAGATGACGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTCTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAAGGTTGTTATGATTCAGATATTGAGTGTGGTAGCTTACTGTCATCTGCAGGGCGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTTTCATCTAAGGAAGAAAATTCCACACTGAAAGCCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGATGAGAGGTTGAATGATATTGTGGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCTTTTTGGGCCCGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAGGTTTTGATGAAGCTCCTTGGCCTTCTTTATCAGCTGATGCTATAGATTTTGTAAAGAAGCTGTTGAATAAGGATTATCGTAAAAGACTAACGGCAGCTCAGGCTCTCAGTCATCCGTGGCTGGCAAATCATTGTGATGATACGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATTTGCTCATCTTCTTTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGCGCAGCTAGCTTATCTCAGAGAACAATTTACTATATTAGGCCCAAACAAAAATGGGTTAATCTCTATGCAGAACTTCAAGACGGCTGTTTTAAGGAGCGCCACTGATGCCTCAAAGGATTCACGGGTCCTAGATTATGTGAACATGGTTAGTTCAATCCAATATCGAAAATTGGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGATGTGTTTGAAAAGGATGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGGCTTAGCCCATCAGTACCTATTCATCTTGTTCTCCAGGATTGGATAAGACACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGACTTCTGCATGGAGTTTCTTCTCGTGTAGTTCAGAAGGCTTGA 1746 0.4404 MGLCHGKPIETSKTEGENSVVFNGDKEVLALPPSSHSTKSSKFPFYSPSPLPSLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSKHFEAHYVLGQEVGRGHFGYTCSAKGKKGSFKGHEVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDAKVVMIQILSVVAYCHLQGVVHRDLKPENFLFSSKEENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEAPWPSLSADAIDFVKKLLNKDYRKRLTAAQALSHPWLANHCDDTKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLAQLAYLREQFTILGPNKNGLISMQNFKTAVLRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYDVFEKDGNRPIMIEELASELGLSPSVPIHLVLQDWIRHSDGKLSFLGFVRLLHGVSSRVVQKA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2493g00017 581 FunFam CDPK-related kinase 1 120 215 - -
Gabi2493g00017 581 SUPERFAMILY Protein kinase-like (PK-like) 126 409 IPR011009 -
Gabi2493g00017 581 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2493g00017 581 Pfam Protein kinase domain 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2493g00017 581 SMART serkin_6 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2493g00017 581 SUPERFAMILY EF-hand 419 572 IPR011992 -
Gabi2493g00017 581 FunFam CDPK-related kinase 3 119 291 - -
Gabi2493g00017 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 113 557 - -
Gabi2493g00017 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Gabi2493g00017 581 Gene3D - 410 572 - -
Gabi2493g00017 581 Gene3D Phosphorylase Kinase; domain 1 120 216 - -
Gabi2493g00017 581 Gene3D Transferase(Phosphotransferase) domain 1 217 409 - -
Gabi2493g00017 581 FunFam Calcium-dependent protein kinase SK5 299 394 - -
Gabi2493g00017 581 ProSiteProfiles Protein kinase domain profile. 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2493g00017 581 CDD STKc_CAMK 126 388 - -
Gabi2493g00017 581 ProSitePatterns Protein kinases ATP-binding region signature. 133 159 IPR017441 GO:0005524
Gabi2493g00017 581 FunFam CDPK-related kinase 1 401 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2493g00017 Gabi-Chr2493 227021 232998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2493g00017 1 579 EF-hand Containing Proteins AT3G50530 66.456 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2493g00017 Pkinase 5.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2493g00017 K13412 - gmx:100803625 1019.22