LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2493g00016	ATGCCTTACCTGGTCCGAGAGAATTTGTTCATCGGAAACATCGGCGCCGCGGCGGAGATCCTCCAAAACGACGGCGTTCAACAGGTGACGCACATCCTCTCCGTTCTGAGCTCCGCATCCATATCCTTCTTCTCCGAATGGCGCAGCGGCCTCACCATCCCCGTCAAGGAGATCCGGAAGGTCCACGTCGGCGACGGCGGCGTCGACGTCGGCGCCAAGAGCGCCCTGTCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCCACGACTTGAAGCTTGTGAGGATGGCTGTGCCTCTCAGGGACACCGAGAACGAGGATTTGTTGGATTTCTTAGACGTTTGCATCGATTTCATTGATCGCAGTAGGAAGGAAGGTTGCGTTTTGGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCAGTTATTACAGCGTATTTGATGAGAACTGAACATCTATCTCAAGAAGATGCCCTTGAATCATTAAGGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTAGAGCAGTTAAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAGTCTAGCCCTGTGTACAAGCGCTTTCGTCTAAAAATACTTGGGGAGAATCATTTCTCAGGGTTGGGGATAGACAGTTCAAAACTCGGTGCAGATCCTGGCATGCCTGTCGAAATTTCTTCAGAGGTGGAAGAAGATAACAAAGTAGAAAATATTCGTAGTCCTACATATCGCTGTAAGAAATGCCGACGGGTAGTCGCATTGCAAGAGCATGTCGTAGATCATATTCCTGGCGAGGGTGAGACATCCTTTGAGTGGCACAAGCGGAGAAGTGGCAACCCTTTTAAAAAGTCTGATGAATCTGAGTGTTCATCCATATTTATTGAGCCTTTACGATGGATGAAAGCTGTTGAAGAAGGCGCTTTGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCTGCTTTTCAACTCCAAAAAGGCCGGGTAGATATAAGCTCTGTGTAA	1077	0.4958	MPYLVRENLFIGNIGAAAEILQNDGVQQVTHILSVLSSASISFFSEWRSGLTIPVKEIRKVHVGDGGVDVGAKSALSPEKLLYSLEYAGHDLKLVRMAVPLRDTENEDLLDFLDVCIDFIDRSRKEGCVLVHCFAGVSRSAAVITAYLMRTEHLSQEDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPVYKRFRLKILGENHFSGLGIDSSKLGADPGMPVEISSEVEEDNKVENIRSPTYRCKKCRRVVALQEHVVDHIPGEGETSFEWHKRRSGNPFKKSDESECSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLQKGRVDISSV	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2493g00016	358	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	355	-	-
	Gabi2493g00016	358	SMART	dsp_5	1	186	IPR020422	GO:0006470\|GO:0008138
	Gabi2493g00016	358	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	189	IPR020422	GO:0006470\|GO:0008138
	Gabi2493g00016	358	CDD	DSP_DUSP12	4	191	-	-
	Gabi2493g00016	358	ProSitePatterns	Tyrosine specific protein phosphatases active site.	131	141	IPR016130	GO:0016311\|GO:0016791
	Gabi2493g00016	358	FunFam	Dual specificity protein phosphatase 12-like	4	206	-	-
	Gabi2493g00016	358	Gene3D	Protein tyrosine phosphatase superfamily	4	206	IPR029021	-
	Gabi2493g00016	358	PIRSF	DUSP12	85	358	IPR016278	GO:0006470\|GO:0008138
	Gabi2493g00016	358	PIRSF	DUSP12	3	47	IPR016278	GO:0006470\|GO:0008138
	Gabi2493g00016	358	Pfam	Dual specificity phosphatase, catalytic domain	94	185	IPR000340	GO:0008138\|GO:0016311
	Gabi2493g00016	358	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	4	189	IPR029021	-
	Gabi2493g00016	358	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	110	165	IPR000387	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2493g00016	Gabi-Chr2493	214344	217829	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2493g00016	94	185	Protein tyrosine phosphatase (PTP) family	AT3G06110	37.634	5.09e-15	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2493g00016	K14819		-	gmx:100804683	590.882