Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2493g00003 ATGGGTAGTAGAAGCAGAACGGTAAACGTTAACACTAAAGACGCTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAACTCAATGGGCATGGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAACCCTTGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATCAATCTTAGCAGAAATCCAATGTTTAGTCAAATGAAGTCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGTCAATTGCAAACTCGGATATAAACCTCTCTGCTGCGATTGCTGGGTCTCAGACATTGCCATTACAGAAAGACTCACAACATAATCTGACTTCGACATCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCTGATGCGAGCCCTACTTCAACAGAGGATACAGATGATAAAAATCAAATGCCTGAAAGGGGTGAGTCTAGTGATAGATCAAAAGATAAAACAGATCAAAAGACGTTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTTGAGCAAGAGCTCCAGCGAGCTCGCCAACAGGGAATATTTATTTCAAGCACAGGAGATCAGGCCCATTCAATGAGTGGAAATGGCGCTATGGCATTTGATGCAGAGTATGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGATGATATCTTCAGGCTGAAAGGCGTTGCTGCAAAAGCTGATGTTTTCCACATTCTATCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAAATTCTGAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAACTGATGGGCATATACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGAGGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCACCTAGCCCATCAGGTTCTTCTGGAAATGTGGCAAATTATATGGGGCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTTGCAATAAGTGATTATTTCTCCAGGCTGAGAGCCCTCAGTTCTCTATGGCTTGCCCGGCCAAGAGAGTGA 1380 0.4399 MGSRSRTVNVNTKDANKVVNGMPSYAPPLPSSSNSMGMEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPMFSQMKSNSQALGADVQFGALSKSIANSDINLSAAIAGSQTLPLQKDSQHNLTSTSAGHRENWGESNMADASPTSTEDTDDKNQMPERGESSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEEALSQGMDALQQSLSETLANGSPSPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2493g00003 459 Coils Coil 193 220 - -
Gabi2493g00003 459 FunFam BZIP family transcription factor 173 222 - -
Gabi2493g00003 459 SMART brlzneu 170 233 IPR004827 GO:0003700|GO:0006355
Gabi2493g00003 459 MobiDBLite consensus disorder prediction 118 176 - -
Gabi2493g00003 459 Pfam bZIP transcription factor 174 214 IPR004827 GO:0003700|GO:0006355
Gabi2493g00003 459 PANTHER TRANSCRIPTION FACTOR TGA9 127 459 - -
Gabi2493g00003 459 MobiDBLite consensus disorder prediction 1 32 - -
Gabi2493g00003 459 MobiDBLite consensus disorder prediction 147 176 - -
Gabi2493g00003 459 CDD bZIP_HBP1b-like 174 226 - -
Gabi2493g00003 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Gabi2493g00003 459 ProSiteProfiles DOG1 domain profile. 239 456 IPR025422 GO:0006351|GO:0043565
Gabi2493g00003 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700|GO:0006355
Gabi2493g00003 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Gabi2493g00003 459 Gene3D - 173 225 - -
Gabi2493g00003 459 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2493g00003 459 MobiDBLite consensus disorder prediction 118 146 - -
Gabi2493g00003 459 Pfam Seed dormancy control 257 331 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2493g00003 Gabi-Chr2493 11038 18672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2493g00003 140 459 bZIP Transcription Factor Family AT3G12250 74.622 1.96e-172 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2493g00003 DOG1 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2493g00003 K14431 - gmx:100780071 777.319