Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2493g00002 ATGGGTAGTAGAAGCAGAACGGTAAACGTTAACACTAAAGACGCTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAACTCAATGGGCATGGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAACCCTTGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATCAATCTTAGCAGAAATCCAATGTTTAGTCAAATGAAGTCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGACATTGCCATTACAGAAAGACTCACAACATAATCTGACTTCGACATCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCTGATGCGAGCCCTACTTCAACAGAGGATACAGATGATAAAAATCAAATGCCTGAAAGGGGTGAGTCTAGTGATAGATCAAAAGATAAAACAGATCAAAAGACGTTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTTGAGCAAGAGCTCCAGCGAGCTCGCCAACAGGGAATATTTATTTCAAGCACAGGAGATCAGGCCCATTCAATGAGTGGAAATGGCGCTATGGCATTTGATGCAGAGTATGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGATGATATCTTCAGGCTGAAAGGCGTTGCTGCAAAAGCTGATGTTTTCCACATTCTATCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAAATTCTGAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAACTGATGGGCATATACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGAGGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCACCTAGCCCATCAGGTTCTTCTGGAAATGTGGCAAATTATATGGGGCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTTGCAATAAGTGATTATTTCTCCAGGCTGAGAGCCCTCAGTTCTCTATGGCTTGCCCGGCCAAGAGAGTGA 1329 0.4387 MGSRSRTVNVNTKDANKVVNGMPSYAPPLPSSSNSMGMEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPMFSQMKSNSQALGADVQFGALSKTLPLQKDSQHNLTSTSAGHRENWGESNMADASPTSTEDTDDKNQMPERGESSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEEALSQGMDALQQSLSETLANGSPSPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2493g00002 442 Pfam Seed dormancy control 240 314 IPR025422 GO:0006351|GO:0043565
Gabi2493g00002 442 PANTHER TRANSCRIPTION FACTOR TGA9 110 442 - -
Gabi2493g00002 442 MobiDBLite consensus disorder prediction 99 129 - -
Gabi2493g00002 442 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 199 IPR004827 GO:0003700|GO:0006355
Gabi2493g00002 442 Pfam bZIP transcription factor 157 197 IPR004827 GO:0003700|GO:0006355
Gabi2493g00002 442 MobiDBLite consensus disorder prediction 130 159 - -
Gabi2493g00002 442 FunFam BZIP family transcription factor 156 205 - -
Gabi2493g00002 442 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2493g00002 442 CDD bZIP_HBP1b-like 157 209 - -
Gabi2493g00002 442 Gene3D - 156 208 - -
Gabi2493g00002 442 ProSiteProfiles DOG1 domain profile. 222 439 IPR025422 GO:0006351|GO:0043565
Gabi2493g00002 442 SMART brlzneu 153 216 IPR004827 GO:0003700|GO:0006355
Gabi2493g00002 442 Coils Coil 176 203 - -
Gabi2493g00002 442 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2493g00002 442 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 160 175 IPR004827 GO:0003700|GO:0006355
Gabi2493g00002 442 SUPERFAMILY Leucine zipper domain 157 200 IPR046347 GO:0003700|GO:0006355
Gabi2493g00002 442 MobiDBLite consensus disorder prediction 99 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2493g00002 Gabi-Chr2493 11036 18672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2493g00002 123 442 bZIP Transcription Factor Family AT3G12250 74.622 1.85e-172 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2493g00002 DOG1 8.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2493g00002 K14431 - gmx:778136 741.88