Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2493g00001 ATGGGTAGTAGAAGCAGAACGGTAAACGTTAACACTAAAGACGCTAACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAACTCAATGGGCATGGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAACCCTTGAGCAATCTCTTGGATTTCGTGTTGAGGATACCATCAATCTTAGCAGAAATCCAATGTTTAGTCAAATGAAGTCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGACACAGTCAATTGCAAACTCGGATATAAACCTCTCTGCTGCGATTGCTGGGTCTCAGACATTGCCATTACAGAAAGACTCACAACATAATCTGACTTCGACATCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCTGATGCGAGCCCTACTTCAACAGAGGATACAGATGATAAAAATCAAATGCCTGAAAGGGGTGAGTCTAGTGATAGATCAAAAGATAAAACAGATCAAAAGACGTTACGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTACAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTTGAGCAAGAGCTCCAGCGAGCTCGCCAACAGGGAATATTTATTTCAAGCACAGGAGATCAGGCCCATTCAATGAGTGGAAATGGCGCTATGGCATTTGATGCAGAGTATGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGTACCATTGTTGACAATTTCATGACACAATTTGATGATATCTTCAGGCTGAAAGGCGTTGCTGCAAAAGCTGATGTTTTCCACATTCTATCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAAATTCTGAAGCTTCTTGTAAATCAATTGGAGCCTTTAACTGAGCAACAACTGATGGGCATATACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGAGGCTCTATCCCAAGGAATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCACCTAGCCCATCAGGTTCTTCTGGAAATGTGGCAAATTATATGGGGCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAGGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAGCAAACATTACAACAAATGCTTAGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTTGCAATAAGTGATTATTTCTCCAGGCTGAGAGCCCTCAGTTCTCTATGGCTTGCCCGGCCAAGAGAGTGA 1386 0.4401 MGSRSRTVNVNTKDANKVVNGMPSYAPPLPSSSNSMGMEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPMFSQMKSNSQALGADVQFGALSKTQSIANSDINLSAAIAGSQTLPLQKDSQHNLTSTSAGHRENWGESNMADASPTSTEDTDDKNQMPERGESSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKLLVNQLEPLTEQQLMGIYNLQQSSQQAEEALSQGMDALQQSLSETLANGSPSPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2493g00001 461 MobiDBLite consensus disorder prediction 119 178 - -
Gabi2493g00001 461 Pfam bZIP transcription factor 176 216 IPR004827 GO:0003700|GO:0006355
Gabi2493g00001 461 MobiDBLite consensus disorder prediction 119 148 - -
Gabi2493g00001 461 PANTHER TRANSCRIPTION FACTOR TGA9 129 461 - -
Gabi2493g00001 461 Coils Coil 195 222 - -
Gabi2493g00001 461 SUPERFAMILY Leucine zipper domain 176 219 IPR046347 GO:0003700|GO:0006355
Gabi2493g00001 461 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Gabi2493g00001 461 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351|GO:0043565
Gabi2493g00001 461 MobiDBLite consensus disorder prediction 149 178 - -
Gabi2493g00001 461 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Gabi2493g00001 461 SMART brlzneu 172 235 IPR004827 GO:0003700|GO:0006355
Gabi2493g00001 461 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2493g00001 461 ProSiteProfiles DOG1 domain profile. 241 458 IPR025422 GO:0006351|GO:0043565
Gabi2493g00001 461 FunFam BZIP family transcription factor 175 224 - -
Gabi2493g00001 461 CDD bZIP_HBP1b-like 176 228 - -
Gabi2493g00001 461 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2493g00001 461 Gene3D - 175 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2493g00001 Gabi-Chr2493 11036 18672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2493g00001 142 461 bZIP Transcription Factor Family AT3G12250 74.622 1.54e-172 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi2493g00001 DOG1 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2493g00001 K14431 - gmx:778136 782.326