Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00016 ATGCTCACCCATATTTCTAACCAAAATAAAAATTCACAAGTTTACTTGGCAGATGGACTGCAATTAGAGACCACTCCTATATCTTATCATGACCATGTTCAAAGAGAGGATTCACTAAATGTAGACCTTCCTATGATCCCTTTGATTTGGATTCGACATAGCACTAATAACTTCTCAGATTTCTGTAAATTAGGAGAAGGTGGATTTGGTCCAGTTTACAAGGGAAATTTAGAAGATGGAACAGATATTGCTGTCAAAAGACTCTCTAAAACATCTGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTAGTATTCATAGCTAAATTGCAACATAGGAACCTTGTGAGACTCTTGGGTTGCTGCTTTGAGGAAAATGAAAAGCTTCTTATATATGAGTACATGCCAAATTCTAGCCTTGACTCTCACCTGTTCAATGAGGAAAAACGAAAGAAAATAGATTGGAAGTTACGATTGAACATTATTAATGGAATTGCAAAAGGACTTCTATACCTTCATGAAGACTCCAGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATATTCTTCTTGATCAAGACATGAATCCTAAAATATCAGATTTTGGACTAGCAAGGACATTTGAAAAAGGCCAGAGTGAGGACAACACTAGAAGAGTTATGGGCACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGGTTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAAATCATTTGTGGAAAAAAGAATAGTGGATTCCATCTTTCAGAACATGGTCAAAGTCTTCTTGTTTATAGTTGGAGACTTTGGTGTGAAGGAAAAAGTTTGGAATTGTTAGATCCAACACTTGAAAAGACATACATAGCCAATGAAGCTATGAAGTGCATACACATTGGTTTGTTATGTGTACAGGAAGATGCAGTAGATAGACCAACCATGTCCATGGTTGTTGTCATGCTTGCAAGTGACAGAATGGCCCTTCCTAACCCTAACCATCCTGCATTTTCAGTTGGAAGAAAAACCAAGGAAGAAGAATCAACATCAAAAGCTTCCAAGGATCCTTCTATTAATGAAGTAACATTATCAAATATTTTACCCAGGTAG 1131 0.3678 MLTHISNQNKNSQVYLADGLQLETTPISYHDHVQREDSLNVDLPMIPLIWIRHSTNNFSDFCKLGEGGFGPVYKGNLEDGTDIAVKRLSKTSGQGLEEFKNEVVFIAKLQHRNLVRLLGCCFEENEKLLIYEYMPNSSLDSHLFNEEKRKKIDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDQDMNPKISDFGLARTFEKGQSEDNTRRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIICGKKNSGFHLSEHGQSLLVYSWRLWCEGKSLELLDPTLEKTYIANEAMKCIHIGLLCVQEDAVDRPTMSMVVVMLASDRMALPNPNHPAFSVGRKTKEEESTSKASKDPSINEVTLSNILPR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00016 376 Pfam Domain of unknown function (DUF3403) 331 376 IPR021820 GO:0004674
Gabi2490g00016 376 CDD STKc_IRAK 64 329 - -
Gabi2490g00016 376 Gene3D Phosphorylase Kinase; domain 1 23 133 - -
Gabi2490g00016 376 FunFam Liguleless narrow1 134 337 - -
Gabi2490g00016 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 371 - -
Gabi2490g00016 376 Gene3D Transferase(Phosphotransferase) domain 1 134 339 - -
Gabi2490g00016 376 SUPERFAMILY Protein kinase-like (PK-like) 41 347 IPR011009 -
Gabi2490g00016 376 MobiDBLite consensus disorder prediction 340 376 - -
Gabi2490g00016 376 SMART serkin_6 58 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2490g00016 376 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 133 - -
Gabi2490g00016 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gabi2490g00016 376 MobiDBLite consensus disorder prediction 361 376 - -
Gabi2490g00016 376 Pfam Protein tyrosine and serine/threonine kinase 63 327 IPR001245 GO:0004672|GO:0006468
Gabi2490g00016 376 MobiDBLite consensus disorder prediction 346 360 - -
Gabi2490g00016 376 ProSiteProfiles Protein kinase domain profile. 58 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00016 Gabi-Chr2490 235434 238512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00016 23 376 Receptor kinase-like Gene Family AT4G11530 53.740 4.20e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2490g00016 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00016 - - mtr:25490357 590.112