Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00014 ATGTTTGTGTTTGATAGTTTCATCTTTGCAGACAAACCAGCTATGCAAGAAGATGGACTAAATCCAATGTTTTCTCAAGATCAGAGTGACAAGGAGGAGAGTGTGAATTCTGACCTTCCTATGATGCCTCTGAGTACTATTCTGAAAAGTACAAGTAATTTTTCTGATGAATGTAAACTGGGGAAAGGTGGATTTGGCCCTGTCTACAAGGGTGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCAGTTCAAGGAGTGGAGGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAACATAGAAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTGCTTGTCTATGAATACATGCCCAATTCAAGCCTTGATTTCCACCTATTTGATATGATGAAGGGTGCACAACTGGATTGGAAAAAGCGATCAAACATTATTAATGGGATTGCTAAAGGACTTCTATATCTTCATGAGGACTCTAGACTAAGAGTTATTCATAGAGACCTGAAAGCTAGCAACATTCTATTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGACTGGCAAGAACATTTGGAGGAGACCAAAGCCAGGCCAACACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGGTTGTTCTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCACTGGAAAAAAGAACAGTAAATTCTATCTCTCAGACCATGGCCAAAGCCTTCTCATATATGCATGGAACCTGTGGTGTGAAAGCAAAGGTTTGGAATTGATGGATCCATTAATAGAAAAATCATGTGTACCAAGTGAAGTTCTCAAGTGTCTACACATTGGTCTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTAGTTCATATGCTTGCAAGTGACACAGTGAGTCTCCCTAAGCCAACACGCCCTGCATTTTCTGTTGGAAGAACTGCCATTGAACAAGGGTCTTCATCAAATGCTTCTAAACATTACTCTGTCGATGATGTAACCATTTCTGTAGTGAGACCAAGGTGA 1119 0.3941 MFVFDSFIFADKPAMQEDGLNPMFSQDQSDKEESVNSDLPMMPLSTILKSTSNFSDECKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEYMPNSSLDFHLFDMMKGAQLDWKKRSNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQSQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIITGKKNSKFYLSDHGQSLLIYAWNLWCESKGLELMDPLIEKSCVPSEVLKCLHIGLLCVQEDAADRPTMSSVVHMLASDTVSLPKPTRPAFSVGRTAIEQGSSSNASKHYSVDDVTISVVRPR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00014 372 SMART serkin_6 54 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2490g00014 372 Pfam Domain of unknown function (DUF3403) 327 372 IPR021820 GO:0004674
Gabi2490g00014 372 FunFam Liguleless narrow1 130 333 - -
Gabi2490g00014 372 CDD STKc_IRAK 60 325 - -
Gabi2490g00014 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 370 - -
Gabi2490g00014 372 ProSiteProfiles Protein kinase domain profile. 54 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2490g00014 372 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 20 129 - -
Gabi2490g00014 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Gabi2490g00014 372 Gene3D Phosphorylase Kinase; domain 1 17 129 - -
Gabi2490g00014 372 SUPERFAMILY Protein kinase-like (PK-like) 37 346 IPR011009 -
Gabi2490g00014 372 Gene3D Transferase(Phosphotransferase) domain 1 130 333 - -
Gabi2490g00014 372 Pfam Protein tyrosine and serine/threonine kinase 58 325 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00014 Gabi-Chr2490 215083 217451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00014 32 372 Receptor kinase-like Gene Family AT4G23140 56.250 5.05e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2490g00014 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00014 - - gmx:100798691 642.499