Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00013 ATGCAAGAAGATGGACTAAATCCAATGTTTTCTCAAGATCAGAGTGACAAGGAGGAGAGTGTGAATTCTGACCTTCCTATGATGCCTCTGAGTACTATTCTGAAAAGTACAAGTAATTTTTCTGATGAATGTAAACTGGGGAAAGGTGGATTTGGCCCTGTCTACAAGGGTGTTTTACCAGATGGAAGGCAAATTGCTGTTAAAAGGCTTTCAAAAACTTCAGTTCAAGGAGTGGAGGAATTCAAGAATGAAGTAATATTGATTGCAAAATTGCAACATAGAAACCTTGTGAGACTGTTGGCTTGCTGCATTGAGCAAAATGAAAAGCTGCTTGTCTATGAATACATGCCCAATTCAAGCCTTGATTTCCACCTATTTGATATGATGAAGGGTGCACAACTGGATTGGAAAAAGCGATCAAACATTATTAATGGGATTGCTAAAGGACTTCTATATCTTCATGAGGACTCTAGACTAAGAGTTATTCATAGAGACCTGAAAGCTAGCAACATTCTATTAGATCATGAAATGAATCCAAAAATCTCAGACTTTGGACTGGCAAGAACATTTGGAGGAGACCAAAGCCAGGCCAACACAATTAGAGTTGTGGGAACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGGTTGTTCTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGTTAGAGATCATCACTGGAAAAAAGAACAGTAAATTCTATCTCTCAGACCATGGCCAAAGCCTTCTCATATATGCATGGAACCTGTGGTGTGAAAGCAAAGGTTTGGAATTGATGGATCCATTAATAGAAAAATCATGTGTACCAAGTGAAGTTCTCAAGTGTCTACACATTGGTCTATTGTGTGTACAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTAGTTCATATGCTTGCAAGTGACACAGTGAGTCTCCCTAAGCCAACACGCCCTGCATTTTCTGTTGGAAGAACTGCCATTGAACAAGGGTCTTCATCAAATGCTTCTAAACATTACTCTGTCGATGATGTAACCATTTCTGTAGTGAGACCAAGGTGA 1077 0.3955 MQEDGLNPMFSQDQSDKEESVNSDLPMMPLSTILKSTSNFSDECKLGKGGFGPVYKGVLPDGRQIAVKRLSKTSVQGVEEFKNEVILIAKLQHRNLVRLLACCIEQNEKLLVYEYMPNSSLDFHLFDMMKGAQLDWKKRSNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQSQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIITGKKNSKFYLSDHGQSLLIYAWNLWCESKGLELMDPLIEKSCVPSEVLKCLHIGLLCVQEDAADRPTMSSVVHMLASDTVSLPKPTRPAFSVGRTAIEQGSSSNASKHYSVDDVTISVVRPR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00013 358 ProSiteProfiles Protein kinase domain profile. 40 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2490g00013 358 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 356 - -
Gabi2490g00013 358 FunFam Liguleless narrow1 116 319 - -
Gabi2490g00013 358 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 7 115 - -
Gabi2490g00013 358 Pfam Protein tyrosine and serine/threonine kinase 44 311 IPR001245 GO:0004672|GO:0006468
Gabi2490g00013 358 SUPERFAMILY Protein kinase-like (PK-like) 23 332 IPR011009 -
Gabi2490g00013 358 Gene3D Phosphorylase Kinase; domain 1 4 115 - -
Gabi2490g00013 358 Gene3D Transferase(Phosphotransferase) domain 1 116 319 - -
Gabi2490g00013 358 MobiDBLite consensus disorder prediction 1 16 - -
Gabi2490g00013 358 Pfam Domain of unknown function (DUF3403) 313 358 IPR021820 GO:0004674
Gabi2490g00013 358 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2490g00013 358 SMART serkin_6 40 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2490g00013 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi2490g00013 358 CDD STKc_IRAK 46 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00013 Gabi-Chr2490 215083 217520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00013 18 358 Receptor kinase-like Gene Family AT4G23140 56.250 2.64e-138 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2490g00013 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00013 - - gmx:100798691 637.106