Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00011 ATGGTTCTTCGTTGGTGCTACTTTGCATGTCTCTTTCTCTTGGTGGCTTTGAAACTAGAGCTAGCTAATGCTCGATTTTACCTAAATGGTGAAGATGAACCCGTCACCTACAAGACAATAGTTGTGGATCCATCTGGGCAAGGAAACTTCATTACCATACAATCTGCTATTGATTCAGTTCCTTCCAATAACAGACGTTGGGTTTTGATCAAGGTGACGGCAGGTATCTACAGGGAAAAAGTGAAAATTCCATTTGACAAGCCTTACATCGCACTAGTAGGAGAGAAAAATAGGAACACTATTGTTGATGGGAATGACCATGCTTCAACCGCTGAAAGTCCTACGATCGAATTCCTGGCTGACAATATTTTTGTCAAATACATGAGTTTTAGGAATTCATACAACAATCCATTAAAAATTAATGACTTGGCAAGTGACATGGCACCTGCGGTAGCGGCGAAGGTATGCGGTGACAAAATTTACTTTTATAGAGTTGGCTTTTTTGGTTTCCAAGACACTTTGTGGGACGAATCAGGAAGACATTACTACAAGTATTGTACCATACAAGGTGCTGTTGATTTTATCTTTGGTGCAGGCCATGCTTTGTTTGAGAGGTGTTCCATATCTGTTATTGATGCGGCACTGGGTCCAGGTAGGCCTGGTTATATCACAGCACATGGGAGAAATAATCCAAACGATGCAACTGGTTTTGTTTTCAAAGATTGCAAGGTTTTTGGAAATGGGAAAACTTACTTAGGAAGGCCTTGGAGAGATTACGCTAGAGTTCTTTTCTATAACACCTATATGTCCAACATTATAAAACCTACTGGTTGGGAACCATGGCATTCCGTTGGACAAGAGGATCGCGTAACGTTTGCTGAGTATAAGAATTTTGGGCCTGGTGCTGACACGTCCAAGAGAGTGAGTTGGACTAAGAAGTTGGATTTATCAACAATTAATAAGATGGCAAGTTTGGATTTCATTGATGATGAAGGATGGCTTTCGACCTTTGGAGCTTTCATTTCTGGATAA 1032 0.4079 MVLRWCYFACLFLLVALKLELANARFYLNGEDEPVTYKTIVVDPSGQGNFITIQSAIDSVPSNNRRWVLIKVTAGIYREKVKIPFDKPYIALVGEKNRNTIVDGNDHASTAESPTIEFLADNIFVKYMSFRNSYNNPLKINDLASDMAPAVAAKVCGDKIYFYRVGFFGFQDTLWDESGRHYYKYCTIQGAVDFIFGAGHALFERCSISVIDAALGPGRPGYITAHGRNNPNDATGFVFKDCKVFGNGKTYLGRPWRDYARVLFYNTYMSNIIKPTGWEPWHSVGQEDRVTFAEYKNFGPGADTSKRVSWTKKLDLSTINKMASLDFIDDEGWLSTFGAFISG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00011 343 Gene3D - 35 341 IPR012334 -
Gabi2490g00011 343 Pfam Pectinesterase 40 329 IPR000070 GO:0030599|GO:0042545
Gabi2490g00011 343 ProSitePatterns Pectinesterase signature 2. 188 197 IPR033131 -
Gabi2490g00011 343 FunFam Pectinesterase 35 337 - -
Gabi2490g00011 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 335 - -
Gabi2490g00011 343 SUPERFAMILY Pectin lyase-like 37 338 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00011 Gabi-Chr2490 166891 174315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00011 2 287 Carbohydrate Esterase AT2G19150 42.509 8.39e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00011 - - gmx:100819252 442.965