Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00008 ATGAATCTTCGTTGGTGTTTCTTTGCTTGTCTCTTTCTCTTGGTGGGGTTGAAAGTAGAGCTAGCTAATGCTCAGATTTACAGAAAGGTTGGAAAAAAAATCCTTCCTTATACCAAAATAGTTGTGGATCAATCAGGGCATGGAAACTTCTCTACCATACAATCTGCTATTGATTCAATCCCTTCCAACAACAGACATTGGGTCAACATCAAAGTGAATGAAGGTACCTACAGAGAAAAAGTGAAGATTCCTCTGGATAAGCCTTACATTATACTAAAAGGAGATGGAAAGAGGTCAACTTTAGTTGACTGGGATGACCATACGGCAACCGATCAAAGTCCTACATTCTCAATCTTGGCTGACAATATTGTTATCAAATCCATGAGCTTTAGGAATTCATACAACAATCCAATGAATAGTAATCCCGTAACACCTGCCGTAGCTGCAATGGTAACGGGCGACAAGTGTTACTTTTTTAGAGTTGGTTTCTTTGGTATGCAAGACACTTTGTGGGACGAATCGGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTATTGATTTTATCTTTGGCAGAGGCCAGGCTTTATTTGAGAGTTGTGCCATATATGTTATTGATGGGGCACTAGGTCCAGGTTGGCCTGGTTATATCACAGCACAAGGGAGATCAAGTCCAAAAGATTCAAATGGTTTTGTTTTCAAAGATTGTAAGGTGTTTGGAACTGGGTCAATTTACTTGGGAAGGGCATGGGGAGATTACTCTAGAGTTCTCTTCTACAATACCTATATGTCCTCCATTGTACAACCTAGTGGTTGGGATGCATGGTATTCCGCTGGACACGAGGATCGCATAACGTTTGCGGAGTATGACAATTTTGGACCTGGTGCTAAAACATCCAAGCGAGTGAATTGGACTACGAAGTTGGGTTTATCAACAGTTAAGGAGTTAGCAAGTTTGAAATTCATTGACACTGAAGGATGGGTTGACAGATTAAGAATTATTGGTAGGCCTGGTTATATCACAGCACATGGGAGAAATAATCCAAACGATGCAACTGGTTTTGTTTTCAAAGATTGCAAGGTTTTTGGAAATGGGAAAACTTACTTAGGAAGGCCTTGGAGAGATTACGCTAGAGTTCTTTTCTATAACACCTATATGTCCAACATTATAAAACCTACTGGTTGGGAACCATGGCATTCCGTTGGACAAGAGTAA 1221 0.4038 MNLRWCFFACLFLLVGLKVELANAQIYRKVGKKILPYTKIVVDQSGHGNFSTIQSAIDSIPSNNRHWVNIKVNEGTYREKVKIPLDKPYIILKGDGKRSTLVDWDDHTATDQSPTFSILADNIVIKSMSFRNSYNNPMNSNPVTPAVAAMVTGDKCYFFRVGFFGMQDTLWDESGRHYYKLCTIQGAIDFIFGRGQALFESCAIYVIDGALGPGWPGYITAQGRSSPKDSNGFVFKDCKVFGTGSIYLGRAWGDYSRVLFYNTYMSSIVQPSGWDAWYSAGHEDRITFAEYDNFGPGAKTSKRVNWTTKLGLSTVKELASLKFIDTEGWVDRLRIIGRPGYITAHGRNNPNDATGFVFKDCKVFGNGKTYLGRPWRDYARVLFYNTYMSNIIKPTGWEPWHSVGQE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00008 406 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 338 404 - -
Gabi2490g00008 406 SUPERFAMILY Pectin lyase-like 38 333 IPR011050 -
Gabi2490g00008 406 FunFam Pectinesterase 36 334 - -
Gabi2490g00008 406 SUPERFAMILY Pectin lyase-like 338 402 IPR011050 -
Gabi2490g00008 406 Gene3D - 37 334 IPR012334 -
Gabi2490g00008 406 Gene3D - 335 406 IPR012334 -
Gabi2490g00008 406 Pfam Pectinesterase 340 402 IPR000070 GO:0030599|GO:0042545
Gabi2490g00008 406 Pfam Pectinesterase 40 323 IPR000070 GO:0030599|GO:0042545
Gabi2490g00008 406 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00008 Gabi-Chr2490 123748 134556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00008 327 406 Carbohydrate Esterase AT2G19150 49.412 3.01e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00008 - - gmx:100819252 502.286