Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2490g00006 ATGGGTCTTAGTTTGAAGATGCAGAGCTACCATCCTGTGGCTTTGAGGTTGAATGATCAAATGGGGTCTAAAAGAAAGTACACTTTTATTCAGGCTCATAGAGCTTGGCTACCAAAGTTTCTGCTTCTGTGGATCCTGCTAATGGCTTTAATCAGTTGGTGCATCTATAGTAAAATGGATGATGACACTAAAGTAAGAAGGAAAGAGGTGTTAGGTAGCCTCTGTGATCAAAGAGCAAGAATGTTGCAAGATCAGTTTAGTGTTAGCGTTAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTTCTACAGAAACCCTTCAGCCATTGACCAGGAAACTTTTGCTGAGTATACAGCCAGGACAGCATTTGAACGGCCATTACTGAGTGGTGTGGCCTATGCTCAAAGAGTTGTTCACTCTGAGAGAGAGAGATTTGAGAAGCAACACGGATGGGTTATAAAGACATTGGAAAGAGAGTCTTCAATGGTTAGAGATGAGTATGCACCTGTGATATTCACGCAAGAAACTGTATCATACCTTGAGTCTCTTGATATGATGTCAGGGGAGGAAGACCGGGAAAACATTTTAAGGGCAAGGGCCACTGGGAAAGCGGTTCTGACTAGCCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTCCCTGTGTACAAATCTAAGCTCCCTCCAAAGCCAACAGTGGAAGAACGCATTGAAGCCACTGCAGGATTTGTTGGGGGGTCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTCTACTAATCCCCTAATCATGTATGGCAACCAACATGAAGAAGGTGATATGTCTCTTTCCCATGAAAGCAAGCTTGATTTTGGAGATCCGTACCGGAAACATAAGATGATATGTAGGTATCATCAGAAGGCACCAACAAATTGGATAGCACTTACCACGGCATTCCTTTTCTTTGTGATTCTGATATTAGTGGGTTACATTTTATATGGTGCTGGAAATCATATTATCAAAGTAGAAGATGATTTCCATGAAATGCAGGAACTAAAAGTCCTAGCAGAAGCAGCTGATGTTGCCAAGTCCCAGTTTCTGGCTACTGTCTCTCATGAAATCAGAACACCTATGAATGGCATTTTAGGAATGCTTGCTTTGCTTCTAGATACAGAATTGAGTTCAACCCAACGAGATTATGCTCAGACTGCTCAAGTATGTGGAAAGGCACTAATAACATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAGGCCGTTCCATTTGATCTTCGTTCCATACTTGATGATGTCCTTTCCCTTTTCTCGGAGAAGTCTCGACACAAAGGTTTAGAGCTGGCTGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTTACTGAACGAGGACATATACTTGTTAAAGTCCACGTAGCAGAAAATAGAAAGTCCACAATGAATGGAAAACATGAGACTTTTCTAAATGGAGAATCAGACGAAGTTTTCCATATATCTGATGGTTATCATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGGAACTGCTGGGATAATTTTAAGCATTTAATTGCAGATGAAGAACTTTGCATTGATTCTTCAAGTAAAATGGTGACCTCTTTTGAATCTTCTGAGCAAGTCACCTTGAGGGTCTGTGTGGAAGACACTGGAATTGGAATTCCTTTCTCAGCCCAGGATAGTATATTCATGCCTTTTGTGCAGGCTGACAGCTCAACTTCTCGAAATTATGGCGGTACTGGTATTGGCTTGAGTATCAGTAAATGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCTCAGGTTGGGAGCACGTTTTCGTTTACGGCAGATTTTGGAATGTTCAAAACAAATTTGGCTAGTGACATGATGAAACTGAATGTGGAAGATCTTCCTTCTAGTTTTAGAGGGCTGAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACTAGTTAAAGTTGCAAATAGCATCAGTAAGGCTGTTTCTTTATGTGGGAAAAACGGTTCTTTGGCATCAGGAGTATTCCAGCCTGATATTGTTTTGGTTGAGAAGGATACATGGATTTCTGGAGAGGATGGGAGTTTCAATGTAAGGAAACTCGACTGGAAACAGAATGGACATATGTTTAAGATGCCTAAAATGATCCTTCTGGCAACCAACAATATTAGTAATACTGAATTTGATAAAGCTAAGGCAACAGGTTTTTCTGATACAATGATAATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGGATTGGGAAGAAGAGGCAGCTAGGGAAAGACATGCCTGATGGTTCTTCTTTTTTGCAAAGCCTTCTCTATGGAAAGAAAATCTTGGTGGTTGATGACAACCGTGTAAACCGGAGGGTTGCTGCAGGTGCACTAAAAAAGTTTGGAGCTGATGTGAAGTGTGTTGAAAGTGGCAAAGCTGCGCTGGAAATGCTTCAATTGCCTCATAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGATTTGAAGCAACTAGTCTAATTCGGATGATGGAGAGCAAGGCAAATGAGCAGATGAATGGTGAAGGAAATGAAAGGGAAAGTGAGTGGCATGTTCCAATATTAGCTATGACAGCTGATGTAATCCATGCCACATACGATGAGTGCTTGAGATGTGGCATGGATGGATATGTTTCCAAGCCATTTGAGGAAGAGAATCTCTATCAGGAAGTTGCAAAGTTTTTCAAATCCAAGCCCATCTCAGACTCATGA 3006 0.4135 MGLSLKMQSYHPVALRLNDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHFYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERERFEKQHGWVIKTLERESSMVRDEYAPVIFTQETVSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTVEERIEATAGFVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTNPLIMYGNQHEEGDMSLSHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILILVGYILYGAGNHIIKVEDDFHEMQELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQVCGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHILVKVHVAENRKSTMNGKHETFLNGESDEVFHISDGYHFKTLSGCEAADERNCWDNFKHLIADEELCIDSSSKMVTSFESSEQVTLRVCVEDTGIGIPFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGMFKTNLASDMMKLNVEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGILVKVANSISKAVSLCGKNGSLASGVFQPDIVLVEKDTWISGEDGSFNVRKLDWKQNGHMFKMPKMILLATNNISNTEFDKAKATGFSDTMIMKPLRASMVAACLQQVLGIGKKRQLGKDMPDGSSFLQSLLYGKKILVVDDNRVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATSLIRMMESKANEQMNGEGNERESEWHVPILAMTADVIHATYDECLRCGMDGYVSKPFEEENLYQEVAKFFKSKPISDS 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2490g00006 1001 SMART HKATPase_4 493 678 IPR003594 -
Gabi2490g00006 1001 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Gabi2490g00006 1001 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Gabi2490g00006 1001 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Gabi2490g00006 1001 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Gabi2490g00006 1001 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Gabi2490g00006 1001 Pfam CHASE domain 111 291 IPR006189 -
Gabi2490g00006 1001 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Gabi2490g00006 1001 FunFam Histidine kinase 4 112 327 - -
Gabi2490g00006 1001 Gene3D CHASE domain 112 327 IPR042240 -
Gabi2490g00006 1001 SMART REC_2 860 989 IPR001789 GO:0000160
Gabi2490g00006 1001 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 447 IPR036097 GO:0000155|GO:0007165
Gabi2490g00006 1001 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 676 IPR003594 -
Gabi2490g00006 1001 SUPERFAMILY CheY-like 859 993 IPR011006 -
Gabi2490g00006 1001 ProSiteProfiles Response regulatory domain profile. 703 834 IPR001789 GO:0000160
Gabi2490g00006 1001 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Gabi2490g00006 1001 Gene3D - 356 444 - -
Gabi2490g00006 1001 ProSiteProfiles Histidine kinase domain profile. 388 678 IPR005467 -
Gabi2490g00006 1001 Pfam Response regulator receiver domain 862 989 IPR001789 GO:0000160
Gabi2490g00006 1001 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Gabi2490g00006 1001 CDD REC_hyHK_CKI1_RcsC-like 862 989 - -
Gabi2490g00006 1001 Gene3D - 697 837 - -
Gabi2490g00006 1001 Gene3D - 855 999 - -
Gabi2490g00006 1001 ProSiteProfiles Response regulatory domain profile. 861 993 IPR001789 GO:0000160
Gabi2490g00006 1001 FunFam Histidine kinase 4 353 444 - -
Gabi2490g00006 1001 SMART CHASE_2 108 293 IPR006189 -
Gabi2490g00006 1001 Gene3D - 445 679 IPR036890 -
Gabi2490g00006 1001 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
Gabi2490g00006 1001 SUPERFAMILY CheY-like 699 835 IPR011006 -
Gabi2490g00006 1001 Gene3D - 59 111 - -
Gabi2490g00006 1001 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 990 - -
Gabi2490g00006 1001 CDD HATPase_EvgS-ArcB-TorS-like 498 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2490g00006 Gabi-Chr2490 102800 109658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2490g00006 11 1001 Histidine Kinase Gene Family AT2G01830 71.215 0.0 1415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2490g00006 HATPase_c 2.1e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2490g00006 K14489 - gmx:100813204 1749.56