Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2489g00001 ATGGATTTTTCAACTTGCAATGAATCTGCTGAACTTGAACTCCTGCCACCTCCACCACAAACCATTCATCCCAATATTGTTCCTGTGAAAGCAGGATTGGGAAAAGCATACGAGCCTTTGAAGAAGATAAATAATACAAATCGTTTGCCAATGGCCAGGAAAGATATTGGATCAAAGGGACAGAAGATACAACTCTTGGCAAACCATTTTAGAGTTGGCATGCGCAAGAAAGATGGTTTCTTCTACCAATATAGTGTTGCAATGTTTTATGAAGATGGGAACCCGGTTGAAGTGAAGGGTATTGGTAGAAAGGTCATGGATAAACTTTGTGCAACCTATGATGAATTACAAAATAATGATTTTGCATATGATGGGGAGAAAAGCTTGTTCACTGTTGGTTCTCTACCAGATAAGAAGCTGAAATTCCTTGTTGTGTTAGAAGAAATTTCATCAAAGAGGATTGGAGAGAATGGAGGCCCTCACGGCCCTAATGAAGGAGACACTAAGAGAATGAGGCGCCAATCGCGGTCCAAAACCTTCAAAGTTGAGATTAATTATGCAGCCAAAATCCCAATGCAAGCAATTGTTAATGCATTACGAGGTCAGGATTCTGATAACTTCCAGGAAGCATTGAGGGTTCTGGACATTATACTGAGGCAGCATGCAGCAAAGCGGGGTTGTCTTCTTGTTCGCCAGTCCTTCTTTCATGACAATCCAAGGAATTATTCTGACCTCGGAGGTGGTGTTCTAGGTTGCCGTGGCTTCCATTCAAGCTTCCGAGCCACTCAAGGGGGTTTATCTCTGAATATAGATGTGTCAACTACAATGATTCTACAGCCTGGTCCTGTACTGGACTTCCTTTGCCTGAATCAGAATGTTAAGCATCCTAACTCAATTGATTGGATCAAGGCAAAAAGAATGCTGAAGAACCTCAGAATCAAGGCTAATAATATTGAGTACAAAATCACTGGACTGAGTGATCAACCCTGCAGGAGCCAGACATTTTTACTAAAACATGGAAAGGATGCTAATGGAGAAGTGCTGTCAAGTGAAATCACAGTTTATGATTACTTCAAGCACCATAAAAAGATTGAATTGCGCTGTTCTAATATGCCATGCATCAATGTTGGCAAACCAAAGCGCCCGGCTTATTTTCCAGTGGAGCTATGCACCTTGGTCCCATTGCAGCGGTACACCAAGGCTCTGACAAATTTGCAAAGGGCTCAGCTTGTGGAGAAGTCAAGGCAAAGGCCTAATGAAAGGAAAGCATCTTTGGAAGATTCGTTAAGAAACAGCAGATATGGTAATGAGCCTATGCTTCTGTCTTCTGGAATTACCATTGAACCTATGTTGAACAAAATTGAAGGCCGTGTTCTGCCAGCCCCAAGTCTTGTAGTTGGAAGAGGAGAGAACTTTATTCCCCGTGGTGGGCGCTGGAACTTCAACCATAAGAAACTAATTGAGCCTGTGAAGATTGAGCATTGGGCCATTGTAAACTTCTCAACTCGGTGTGATATAGTATACCTGTGTAACACCCTTAAGAAATGTGCTGACATGAAAGGGATTCACTTAAATGCTCCGAACAAAGTATTTGATGAGGATCAGAGCTACAAACGTGAGCCAGCCAATGTAAGGGTTGAAAAATTGTATACATACGTAAAGTCCATGCTGCCTGGGTTCCCTCAACTTCTGTTGTGTATTCTTCCAGAGAGAAAGAATTCTGAGCTTTATGGTCCTTGGAAAAGGAGAAGTCTTGCTGATGAAGGGGTTGCAACACAATGTATTGCACCAGTAAAGATTAATGATCAGTACATTACTAATGTTCTCTTGAAAATAAATGCAAAGCTTGGTGGGATTAATTCCAAATTGTCAATAGAGAATTCACGTTCCATACCTTTTGTTTCTAATGTACCTACCTTAATTCTTGGTATGGATGTTTCACATGGTTCGCCTGGTCGATCAGATGTGCCATCTATTGCTGCGGTTGTCAGCTCAAGATGTTGGCCTGAAATTTCACGTTATAGAGCAGCAGTTCGCACTCAATCATCCAAAGTTGAGATGATTGCATCTCTATTTAAGCCTGTTTCTGATACTGAGGATGAGGGTATCATAAGGGAGCTGATTAAGGACTTCAAAAATACTTCAGGACATAAGCCTCAACAAATTATAATTTTCAGGGATGGAGTGAGTGAATCACAGTTCAACCAGGTCCTGAACATCGAGTTGAATGATATCATTAAGGCATGCAATCATCTTGATGAACGGTGGTGTCCAAAATTCACTGTGATTGTTGCCCAGAAGAATCATCACACTAAGTTCTTCCTGCCCAGTGGTGCAGAGAATGTTCCACCTGGCACTGTTATTGACAACAGTATCTGCCATCCCAAAAACAACGACTTTTACATGTGTGCACAAGCTGGGATCATGGGGACAACTAGACCTACCCATTACCATGTTTTGCATGATGAGATCGGGTTCTCCGCAGATGCTGTGCAAGAACTAGTGCATCAGCTATCTTATGTTTATCAAAGGAGCACAACTGCCATATCATTAGTTGCCCCCATTTGCTATGCCCACTTGGCAGCTGCCCAGATGGCACAATTCATGAAGTTTGATGAACTGTCTGAGACTTCATCCAGCCACGGTGGATTGACATCTGTTGGAGTCCCTCTAGTTCCTCAGTTGCCCCGTCTTCACGAAGAAGTCACCAACTCCATGTTCTTTTGTTAA 2730 0.4231 MDFSTCNESAELELLPPPPQTIHPNIVPVKAGLGKAYEPLKKINNTNRLPMARKDIGSKGQKIQLLANHFRVGMRKKDGFFYQYSVAMFYEDGNPVEVKGIGRKVMDKLCATYDELQNNDFAYDGEKSLFTVGSLPDKKLKFLVVLEEISSKRIGENGGPHGPNEGDTKRMRRQSRSKTFKVEINYAAKIPMQAIVNALRGQDSDNFQEALRVLDIILRQHAAKRGCLLVRQSFFHDNPRNYSDLGGGVLGCRGFHSSFRATQGGLSLNIDVSTTMILQPGPVLDFLCLNQNVKHPNSIDWIKAKRMLKNLRIKANNIEYKITGLSDQPCRSQTFLLKHGKDANGEVLSSEITVYDYFKHHKKIELRCSNMPCINVGKPKRPAYFPVELCTLVPLQRYTKALTNLQRAQLVEKSRQRPNERKASLEDSLRNSRYGNEPMLLSSGITIEPMLNKIEGRVLPAPSLVVGRGENFIPRGGRWNFNHKKLIEPVKIEHWAIVNFSTRCDIVYLCNTLKKCADMKGIHLNAPNKVFDEDQSYKREPANVRVEKLYTYVKSMLPGFPQLLLCILPERKNSELYGPWKRRSLADEGVATQCIAPVKINDQYITNVLLKINAKLGGINSKLSIENSRSIPFVSNVPTLILGMDVSHGSPGRSDVPSIAAVVSSRCWPEISRYRAAVRTQSSKVEMIASLFKPVSDTEDEGIIRELIKDFKNTSGHKPQQIIIFRDGVSESQFNQVLNIELNDIIKACNHLDERWCPKFTVIVAQKNHHTKFFLPSGAENVPPGTVIDNSICHPKNNDFYMCAQAGIMGTTRPTHYHVLHDEIGFSADAVQELVHQLSYVYQRSTTAISLVAPICYAHLAAAQMAQFMKFDELSETSSSHGGLTSVGVPLVPQLPRLHEEVTNSMFFC 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2489g00001 909 FunFam Protein argonaute 3 631 909 - -
Gabi2489g00001 909 CDD PAZ_argonaute_like 280 393 - -
Gabi2489g00001 909 SMART Piwi_a_2 563 870 IPR003165 GO:0003676
Gabi2489g00001 909 FunFam Protein argonaute 7 275 398 - -
Gabi2489g00001 909 Gene3D paz domain 274 398 - -
Gabi2489g00001 909 ProSiteProfiles Piwi domain profile. 563 870 IPR003165 GO:0003676
Gabi2489g00001 909 Gene3D - 630 909 IPR036397 GO:0003676
Gabi2489g00001 909 MobiDBLite consensus disorder prediction 154 175 - -
Gabi2489g00001 909 Pfam N-terminal domain of argonaute 61 218 IPR032474 -
Gabi2489g00001 909 SMART DUF1785_2 228 280 IPR014811 -
Gabi2489g00001 909 SMART PAZ_2_a_3 281 416 IPR003100 GO:0005515
Gabi2489g00001 909 SUPERFAMILY PAZ domain 275 434 IPR036085 GO:0005515
Gabi2489g00001 909 Gene3D - 458 624 - -
Gabi2489g00001 909 Pfam Argonaute linker 1 domain 230 277 IPR014811 -
Gabi2489g00001 909 ProSiteProfiles PAZ domain profile. 320 394 IPR003100 GO:0005515
Gabi2489g00001 909 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 48 872 - -
Gabi2489g00001 909 Pfam PAZ domain 284 410 IPR003100 GO:0005515
Gabi2489g00001 909 CDD Piwi_ago-like 438 864 IPR045246 -
Gabi2489g00001 909 Pfam Piwi domain 564 870 IPR003165 GO:0003676
Gabi2489g00001 909 SUPERFAMILY Ribonuclease H-like 547 868 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2489g00001 Gabi-Chr2489 20849 26991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2489g00001 45 909 Eukaryotic Initiation Factors Gene Family AT5G43810 37.017 2.26e-166 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2489g00001 K11593 - aew:130767408 1260.74