Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00040 ATGGCGGCATCATCTTCCTCAGCATCGCTCTTTGGATATAGAGAAGAGGATCAGAACCAGATGAACCAACAACAGCATTCCATGACACCATCATCGTCAACAATTCCAGCTGCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGTGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAGTATGCAGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGGGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGACGAGACAGCTTCATCACCCACAGGGCCTTCTGTGATGCATTGGCTCAAGAGAGTGTGAGACAACCTCCTAACCTTAGCGGTGCAATTGGGAGCCACCTATATGGAAGTAGCAACATGGCTTTAGCCTTATCTCAGGTGGGTCCACAGATTTCCAACATGCAAGACCAAAATAACCAATCTCCAACTGAACTATTGCGTCTTGGCGGTGGTGGTGCCGGTCGAACCGGACAATTCGACCACATTCTCCCACAATCACTCGGTTCATCACCCTTTAGACCTTCACAACAACAAACCGTTCATTCTCCAGCTTCATTCTTCATGTCTGAATCAAACCAAAACTACCACAACAATTCTCCACAACAACAACAACAAGGGTTGTTGCAGAACAAGCCATTCCAGGGACTAATGCAATTGTCTCATCATGAAGTACTTAACAATCATAATCATGGTGCCAACCACTTCAACATTCCCTTCCTTTCAAGTAATAGCACTAACAGCAGCAACAACTCCTTCTCTGAACACTTCAACACTACTACTACTGGAACAGGAGGCAATAATGAAGGGACAAATTTCTTCACTACTATGATAGGTGGTGGTGGTGGTCACCAAACAACAACAACTTCAAGTGCTCCTTCTCTCTTCAGCGGTACTTCTCTTCAAAGCAACAGTGCAATATCTCACATGTCAGCAACTGCACTGCTTCAGAAAGCTGCTCAAATGGGTGCAACTTCAAGCAACAGCACTGCCTCACTTCTTAAAAGCTTTGGAAGCACTTCTTCTAGCAGCGGATCCAAATCTGATCACAGGCCGTTGGTTGCTGCAAACTATGGAAACATTTTCGGAGGAAACGAACAGAGCAATCTACAAGACTTGATGAACTCATTTGCTGCTAGTGGGAACTCTTCTATATTCGAAACTGGGTCTTCTGGAGGACTTACTGGGTTTGAAGCATATGATCATAACAACAACACAAATAGGGACCCTAATAAACTTCAGTCAATGAACATCGGAGGCTCTGATAGGCTCACCCGTGATTTTCTAGGTGTTGGTCAGATAGTAAGAAGCATGAGTGGTAGTGGTGGGGTTTCACAAAGAGAACAGCAACAGCAACATGGTTTCAGCTTGAGCACTTTGGAGGCCGAAAGAAATGCTACGGCGCCGTCAGGGCAATCTTTTAGAGGAGGAGGGAATTTTCAGTGA 1752 0.4578 MAASSSSASLFGYREEDQNQMNQQQHSMTPSSSTIPAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVRQPPNLSGAIGSHLYGSSNMALALSQVGPQISNMQDQNNQSPTELLRLGGGGAGRTGQFDHILPQSLGSSPFRPSQQQTVHSPASFFMSESNQNYHNNSPQQQQQGLLQNKPFQGLMQLSHHEVLNNHNHGANHFNIPFLSSNSTNSSNNSFSEHFNTTTTGTGGNNEGTNFFTTMIGGGGGHQTTTTSSAPSLFSGTSLQSNSAISHMSATALLQKAAQMGATSSNSTASLLKSFGSTSSSSGSKSDHRPLVAANYGNIFGGNEQSNLQDLMNSFAASGNSSIFETGSSGGLTGFEAYDHNNNTNRDPNKLQSMNIGGSDRLTRDFLGVGQIVRSMSGSGGVSQREQQQQHGFSLSTLEAERNATAPSGQSFRGGGNFQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00040 583 FunFam protein indeterminate-domain 12-like 50 118 - -
Gabi2486g00040 583 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gabi2486g00040 583 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gabi2486g00040 583 Gene3D Classic Zinc Finger 50 118 - -
Gabi2486g00040 583 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 549 IPR031140 -
Gabi2486g00040 583 MobiDBLite consensus disorder prediction 265 284 - -
Gabi2486g00040 583 MobiDBLite consensus disorder prediction 1 56 - -
Gabi2486g00040 583 SMART c2h2final6 147 167 IPR013087 -
Gabi2486g00040 583 SMART c2h2final6 112 142 IPR013087 -
Gabi2486g00040 583 SMART c2h2final6 71 93 IPR013087 -
Gabi2486g00040 583 MobiDBLite consensus disorder prediction 349 370 - -
Gabi2486g00040 583 MobiDBLite consensus disorder prediction 251 284 - -
Gabi2486g00040 583 Gene3D Classic Zinc Finger 125 204 - -
Gabi2486g00040 583 MobiDBLite consensus disorder prediction 1 48 - -
Gabi2486g00040 583 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gabi2486g00040 583 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gabi2486g00040 583 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00040 Gabi-Chr2486 296574 303415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00040 41 545 IDZ Gene Family AT2G02070 49.912 3.12e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2486g00040 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00040 K25870 - gmx:100786121 710.679