Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00026 ATGAATAGCTGCACTTGCTCTGAGCAGCATTTACTTAAGGAGGGCATGCCGCTAGTTTTCTATGTTCTTGGTGTAGGAGAAACAGAAACTTCATCCATGGCTTACCATCGTATCGGGGGAAATGATATCCTGCAAATCCGTTTCTTCAAGATAATTCTTAAAACTAATCTTGAAAGGATTAAAATACCTAATATGTTTACAAGGAGATATGGAGGTGGTTTATCAAATCCAGTGTTTGTCAAGCCTCCAGATGGCACTGAATGGAAAGTGTACTGGACAAAACAGAATGGTGAGATTTGGTTCGAAAAAGGTTGGAAAGAATTTGCTGAAAAATACTGTCTAGATAATGGCTACTTGGTGGTGTTTAAATATGAAGGAACTTCCCAGTTTGACGTGGTCATACTTGACCAGAGTGCTCTAGAAATAGACTACCCTCAGAAGGCTAGACAAAAGTCACCACTATTTTCTCCTAGACCTCATAAGAAAATGAGAGGTGAGAAGGCTACTCAAAGAACTTCATCACTGAATCGGCCACGCGAAGTAAAAGCTCGGGAAGTAGCTAAAAATTTCATCTCATGCAATCCATTTTTCACGGTTTTCCTAAAGCCTGTTCATCTGGCAGAATCCCAGCTGAGCGTACCAGATTTGAAAGGTTATATTGAGAACAAGGATAAATATGTGACGCTGAAGCTTGGGAAAGGATCATGGCATGTGAAGTTGCTCAGTAGTCACAAGTCCCGTTCAAGGAATAGACTCTCTGCTGGTTGGTCCTTGTTTGCAAGCGAAACTGAATTGCAACCAGGAGACGTTTGTGTCTTTGAACTGATTAACCGAGAAGATTCCGTTTTTATGGTTCATGTTTTCAAAAGCCGTAGTTAA 879 0.4073 MNSCTCSEQHLLKEGMPLVFYVLGVGETETSSMAYHRIGGNDILQIRFFKIILKTNLERIKIPNMFTRRYGGGLSNPVFVKPPDGTEWKVYWTKQNGEIWFEKGWKEFAEKYCLDNGYLVVFKYEGTSQFDVVILDQSALEIDYPQKARQKSPLFSPRPHKKMRGEKATQRTSSLNRPREVKAREVAKNFISCNPFFTVFLKPVHLAESQLSVPDLKGYIENKDKYVTLKLGKGSWHVKLLSSHKSRSRNRLSAGWSLFASETELQPGDVCVFELINREDSVFMVHVFKSRS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00026 292 PANTHER B3 DOMAIN-CONTAINING 47 286 - -
Gabi2486g00026 292 SMART B3_2 48 138 IPR003340 GO:0003677
Gabi2486g00026 292 SMART B3_2 196 291 IPR003340 GO:0003677
Gabi2486g00026 292 CDD B3_DNA 196 289 IPR003340 GO:0003677
Gabi2486g00026 292 ProSiteProfiles B3 DNA-binding domain profile. 45 138 IPR003340 GO:0003677
Gabi2486g00026 292 ProSiteProfiles B3 DNA-binding domain profile. 196 291 IPR003340 GO:0003677
Gabi2486g00026 292 MobiDBLite consensus disorder prediction 151 176 - -
Gabi2486g00026 292 CDD B3_DNA 47 136 IPR003340 GO:0003677
Gabi2486g00026 292 SUPERFAMILY DNA-binding pseudobarrel domain 193 290 IPR015300 -
Gabi2486g00026 292 SUPERFAMILY DNA-binding pseudobarrel domain 47 145 IPR015300 -
Gabi2486g00026 292 Gene3D - 177 291 IPR015300 -
Gabi2486g00026 292 Gene3D - 42 139 IPR015300 -
Gabi2486g00026 292 Pfam B3 DNA binding domain 55 134 IPR003340 GO:0003677
Gabi2486g00026 292 Pfam B3 DNA binding domain 196 290 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00026 Gabi-Chr2486 169634 171879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00026 47 145 B3 DNA Binding Superfamily AT1G49475 42.574 3.23e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2486g00026 B3 5.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00026 - - gmx:102661781 346.28