Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00025 ATGACGACTCATTTTGGCCGGCGAAATGCAATCCTGCCTATTCATTTCTTCAAGATTATTCTTAAAACTAATATTGAAAGACTTAAAATACCCAATAAGTTTACAAGGAGTTATGGAGGTGGTTTGTCAAATCCAGTGTTTATCAGGCCTCCAGATGGCTCAGGATGGAAAGTGTATTGGACAAAACAGAACGATGAAGTTTGGTTCGAAAAGGGTTGGAAAGAATTTGTTGAAAATTACTCTCTAGATCATGGTTATTTGGTTATGTTTAAATATGAAGGTACTTCACAGTTTGATGTACTCATACTTGACCAGAGTGCTCTAGAAATAGATTATCCTTCCAATGACAATTGTGACGAAAAGGATGATCATAACCAGAGTGATGATGAATCATTGAAAATTTTGGGGGGAATCCCTCCAAAGAAAAAGACCAGGCCAAACTCACCACTGTTTTCTGCTCCATCTCGTAAGAAAATGAGATATGGGACTCATAGGAATATGGAAATTAGCTCCAATCTGCAAAAAACTACTCAAAGAACTTCATCGTTGAATTGGCCCAAGCATGTTAGAGCTCAGGAAGTAGCTAAGAAATTCGTCTCATACAATCCTTTTTTCACGGTGTTCATAAAGCCAGTTCATCTGTCAGAACGTGCATTGTTCGTAAATAATGAGAGCAAGGAGCAGAATGTGATAATTCAGCTTGGGAAAAGATCGTGGCCTGTGAAGTTGACCGGTTACAGTACATTTACCCGCTTCTCTTCTGGTTGGTCTCTGTTTGCAACAGAGAGTAAATTGCGAGCTGGAGATGTTTGCATCTTTGAGCTGATTGACAAAGAAGTTCCCTTGTTGGAAGTTCATGTTTTCAAAAGTCCCAACTAA 879 0.3891 MTTHFGRRNAILPIHFFKIILKTNIERLKIPNKFTRSYGGGLSNPVFIRPPDGSGWKVYWTKQNDEVWFEKGWKEFVENYSLDHGYLVMFKYEGTSQFDVLILDQSALEIDYPSNDNCDEKDDHNQSDDESLKILGGIPPKKKTRPNSPLFSAPSRKKMRYGTHRNMEISSNLQKTTQRTSSLNWPKHVRAQEVAKKFVSYNPFFTVFIKPVHLSERALFVNNESKEQNVIIQLGKRSWPVKLTGYSTFTRFSSGWSLFATESKLRAGDVCIFELIDKEVPLLEVHVFKSPN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00025 292 SMART B3_2 16 106 IPR003340 GO:0003677
Gabi2486g00025 292 SMART B3_2 204 291 IPR003340 GO:0003677
Gabi2486g00025 292 Gene3D - 13 107 IPR015300 -
Gabi2486g00025 292 MobiDBLite consensus disorder prediction 114 155 - -
Gabi2486g00025 292 Pfam B3 DNA binding domain 226 289 IPR003340 GO:0003677
Gabi2486g00025 292 Pfam B3 DNA binding domain 24 102 IPR003340 GO:0003677
Gabi2486g00025 292 SUPERFAMILY DNA-binding pseudobarrel domain 14 113 IPR015300 -
Gabi2486g00025 292 MobiDBLite consensus disorder prediction 114 130 - -
Gabi2486g00025 292 ProSiteProfiles B3 DNA-binding domain profile. 237 291 IPR003340 GO:0003677
Gabi2486g00025 292 PANTHER B3 DOMAIN-CONTAINING 14 287 - -
Gabi2486g00025 292 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Gabi2486g00025 292 CDD B3_DNA 15 104 IPR003340 GO:0003677
Gabi2486g00025 292 SUPERFAMILY DNA-binding pseudobarrel domain 202 289 IPR015300 -
Gabi2486g00025 292 Gene3D - 186 291 IPR015300 -
Gabi2486g00025 292 CDD B3_DNA 204 289 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00025 Gabi-Chr2486 162436 164062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00025 12 289 B3 DNA Binding Superfamily AT3G18990 28.274 4.57e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2486g00025 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00025 - - aprc:113871917 314.309