Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00013 ATGAACATGGTCATGCAAAACTTAACTGAGAGACTAAGACCCCTTGTGGGTTTGAACGGTTGGGACTACTGTGTCTGCTGGAGATTGAGTGAAGACCAAAGGTTTCTTGAGTGGCTGGGGTGCTGTTGTGCTGGCACTGATCAAAACAATCAAAATGCTGGGGAAGAACATCTTTTCCCTATCTCTTCTTCAGTGGCTTCATGCAGGGACACCATTTTTCCACACCCAAGAACAAAGCCCTGTGATCTTCTTTCCCAACTCACCACTTCCATACCCATAGATTCTGGGATTCATGCACAGACCTTATTAACAAACCAACCCAATTGGGTGAACTATTCCAATAACTTGGATTCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTCCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGCCTGAGGATCATCATGTAATAGATTTTATCACAACCCAGTGCATTGTCTTGGTGGAGCAGGAAGCGGTGAACCACTCAATGAGCTTCAATATTGACGTGAATTCAATGAGCAACATGCAATCAAATGCACTTCTAGGCGATGAAAATGAAGGGAATAACAGGAACAATCATTTCCAGACCCCAATTTCTCACACAACAGCATCAGAGACTTTGAGTCTACCACATGATGTATCTATGGACCGCATTGGTCTCTGTAGTTCTCCACTGAACTTCATGCAGCAGTTCAATTACAACCAGCAGAACAGAATGAAAAACGATGTATTTTCTGAAGAATACCAAGGTTCCTTCCTTCATGACAAGCAAAGTAACCAACTCAAATCCTCTGCAGAAGAGGAGCATGATGCGTATCAGAAATGCATGATTACAGATTCCCAATATATGGAGCCTTTGGACACCAAGGAGAAGCAAGGACACGACAAGGACTTGCTGAGACACGTTGTTGGTCGATCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTATAGGAGAAGGAATGGGAAAGGAAACCAGTCCAAAAACCTTGTAGCAGAGAGGAAGAGAAGGAAGAAGCTCAATGACAGGTTATATAACCTTCGTTCTTTGGTTCCAAGAATCTCTAAGCTGGATAGGGCTTCCATTCTCGGGGATGCCATTGAGTTTGTAAAAGATTTGCAGAAGCAAGTGAAAGAGCTCCAAGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGAAATAATCAATACGTGGTGGGTGTTCAACCAGATATTGTTAGACAGATTAATGGAGGTGAACTTGGGCCAAAAGCTGAACATGAAAAGACCCAAACTGGGTTTCATGTGGGGACATCAGGGAATGGATTTATGTCAAAACAGAAACAGGAAATTGATGCTATTGCCATTGAGAAGCAGACTCAGCAGATGGAGCCACAAGTTGAAGTGGCTCTAATAGACGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCATAGGGCTGGTGGGTTTGTGAAATTGATGGAGGCATTGAATACTTTGGGCATGGATGTAGTACATGCCACTGTAACCAGCCACAAGGGCCTCGTGTCAAATGTTTTTAAAGTTGAGAAAAAGGACAGTGAAATGGTTGAGGGCGCTGAAGATCTAAGAGACTCACTAATTGAGCTTACGCGGAACCGACCTAGAGAGTGGACTCATGAGATGACAGCAACATCAGAAAATGGTGTGGGCAGGGATCAACATCTCCTCCACAACCACCAAATGGGTGGCTATCACCCTCACCAGTTTCATAGTTAA 1806 0.4358 MNMVMQNLTERLRPLVGLNGWDYCVCWRLSEDQRFLEWLGCCCAGTDQNNQNAGEEHLFPISSSVASCRDTIFPHPRTKPCDLLSQLTTSIPIDSGIHAQTLLTNQPNWVNYSNNLDSNILEETIGTQVLIPVPGGLVELFVTKQVPEDHHVIDFITTQCIVLVEQEAVNHSMSFNIDVNSMSNMQSNALLGDENEGNNRNNHFQTPISHTTASETLSLPHDVSMDRIGLCSSPLNFMQQFNYNQQNRMKNDVFSEEYQGSFLHDKQSNQLKSSAEEEHDAYQKCMITDSQYMEPLDTKEKQGHDKDLLRHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNQYVVGVQPDIVRQINGGELGPKAEHEKTQTGFHVGTSGNGFMSKQKQEIDAIAIEKQTQQMEPQVEVALIDGNEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSEMVEGAEDLRDSLIELTRNRPREWTHEMTATSENGVGRDQHLLHNHQMGGYHPHQFHS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00013 601 Coils Coil 380 407 - -
Gabi2486g00013 601 CDD ACT_UUR-ACR-like 495 559 - -
Gabi2486g00013 601 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 242 560 - -
Gabi2486g00013 601 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 404 IPR036638 GO:0046983
Gabi2486g00013 601 Gene3D - 330 406 IPR036638 GO:0046983
Gabi2486g00013 601 SMART finulus 347 396 IPR011598 GO:0046983
Gabi2486g00013 601 Pfam Helix-loop-helix DNA-binding domain 348 391 IPR011598 GO:0046983
Gabi2486g00013 601 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
Gabi2486g00013 601 MobiDBLite consensus disorder prediction 313 347 - -
Gabi2486g00013 601 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 157 IPR025610 -
Gabi2486g00013 601 CDD bHLH_AtAMS_like 344 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00013 Gabi-Chr2486 81102 84068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00013 5 574 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 44.839 3.02e-146 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2486g00013 bHLH-MYC_N 9.1e-22 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00013 - - gmx:100798282 852.818