Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00002 ATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAATTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAGCATCTGTTGCTAGTGGACCCAATGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATGACCGAAGCTGATCTTTGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATTCAAGAAATGCCCAGAGCTTGAATGGTCAATTAGAGATTGGTGGCAGGACAATCAAGGTATCAGCTATTACTGATCAATCTGGAATGCTAGAAGCTGGAGGAAATCCTGGTGATTTTGATGATGATGAAGGTGGTGGCATGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTTGATTCCCTTGGTAATTCTGTTAACAAAGATATTAGTCTACCAGCAGCGGCACTTCTGGGAGCTGCGAGGGGTTCTCCACTGGTTCCCGCCCTTTCTTCAGTTACTGCAGTAGCTGGTTTGCCAGGTGGAGGTCTCCAAGTTCCTACGGCTACAATTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCCGATTTTGATTTAGATATTAAAGAAGATGTTGAGGCAGAGTGCTCCAAGTTTGGGAAGTTAAAACATATACATGTTGATAAGAATAGTGCTGGTTTTGTGTACTTACGATTTGAAAATACCCAATCTGCAATAAGTTCACAGCTGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGATAAATTCCTAGACAGCAAATAA 1059 0.4391 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVASGPNGLIGPYSGGARRLYVGNLHFNMTEADLCRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDSRNAQSLNGQLEIGGRTIKVSAITDQSGMLEAGGNPGDFDDDEGGGMSLNACSRALLMQKLDRSGTASSMVDSLGNSVNKDISLPAAALLGAARGSPLVPALSSVTAVAGLPGGGLQVPTATIPSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIHVDKNSAGFVYLRFENTQSAISSQLALHGRWFAGKMITASFMVPQSYEDKFLDSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00002 352 Gene3D - 53 152 IPR012677 -
Gabi2486g00002 352 Gene3D - 253 352 IPR012677 -
Gabi2486g00002 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Gabi2486g00002 352 Gene3D - 1 52 IPR012677 -
Gabi2486g00002 352 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 350 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi2486g00002 352 NCBIfam splicing factor, CC1-like family 1 350 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi2486g00002 352 SMART rrm1_1 259 337 IPR000504 GO:0003723
Gabi2486g00002 352 SMART rrm1_1 73 145 IPR000504 GO:0003723
Gabi2486g00002 352 SUPERFAMILY RNA-binding domain, RBD 254 338 IPR035979 GO:0003676
Gabi2486g00002 352 SUPERFAMILY RNA-binding domain, RBD 1 70 IPR035979 GO:0003676
Gabi2486g00002 352 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 163 276 IPR029123 -
Gabi2486g00002 352 CDD RRM3_RBM39_like 257 339 - -
Gabi2486g00002 352 FunFam CC1-like, splicing factor 67 175 - -
Gabi2486g00002 352 SUPERFAMILY RNA-binding domain, RBD 69 164 IPR035979 GO:0003676
Gabi2486g00002 352 FunFam Splicing factor, CC1-like protein 253 352 - -
Gabi2486g00002 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00002 Gabi-Chr2486 2698 12338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00002 2 135 Eukaryotic Initiation Factors Gene Family AT4G34110 30.882 1.29e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00002 K13091 - gmx:100789839 574.704