Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2486g00001 ATGTTATTGTTATTTTCAAATCTGAACCGATATAAAGAGGTTGCACGTATTCCAACAACTTGGGCTATAATTTTGTGTTTTTTGTTATGTTGCAGACGTCAGAAAGAGAAAAAGGAAGAAGTGGCAGAGCCTGAGGTTGATCCTGAAAGAGATCAAAGAACGGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATACGAGTTCTTCTCGAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAATTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAGCATCTGTTGCTAGTGGACCCAATGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATGACCGAAGCTGATCTTTGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTACAGTTTGCACGCCTTGAAGATTCAAGAAATGCCCAGAGCTTGAATGGTCAATTAGAGATTGGTGGCAGGACAATCAAGGTATCAGCTATTACTGATCAATCTGGAATGCTAGAAGCTGGAGGAAATCCTGGTGATTTTGATGATGATGAAGGTGGTGGCATGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCACTGCATCAAGCATGGTTGATTCCCTTGGTAATTCTGTTAACAAAGATATTAGTCTACCAGCAGCGGCACTTCTGGGAGCTGCGAGGGGTTCTCCACTGGTTCCCGCCCTTTCTTCAGTTACTGCAGTAGCTGGTTTGCCAGGTGGAGGTCTCCAAGTTCCTACGGCTACAATTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCCGATTTTGATTTAGATATTAAAGAAGATGTTGAGGCAGAGTGCTCCAAGTTTGGGAAGTTAAAACATATACATGTTGATAAGAATAGTGCTGGTTTTGTGTACTTACGATTTGAAAATACCCAATCTGCAATAAGTTCACAGCTGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGTCATATGAGGATAAATTCCTAGACAGCAAATAA 1314 0.4307 MLLLFSNLNRYKEVARIPTTWAIILCFLLCCRRQKEKKEEVAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVASGPNGLIGPYSGGARRLYVGNLHFNMTEADLCRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDSRNAQSLNGQLEIGGRTIKVSAITDQSGMLEAGGNPGDFDDDEGGGMSLNACSRALLMQKLDRSGTASSMVDSLGNSVNKDISLPAAALLGAARGSPLVPALSSVTAVAGLPGGGLQVPTATIPSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIHVDKNSAGFVYLRFENTQSAISSQLALHGRWFAGKMITASFMVPQSYEDKFLDSK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2486g00001 437 FunFam RNA-binding protein 39 isoform X1 46 138 - -
Gabi2486g00001 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 130 IPR000504 GO:0003723
Gabi2486g00001 437 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 248 361 IPR029123 -
Gabi2486g00001 437 SUPERFAMILY RNA-binding domain, RBD 339 423 IPR035979 GO:0003676
Gabi2486g00001 437 SUPERFAMILY RNA-binding domain, RBD 49 154 IPR035979 GO:0003676
Gabi2486g00001 437 Gene3D - 338 437 IPR012677 -
Gabi2486g00001 437 CDD RRM1_RBM39_like 54 126 - -
Gabi2486g00001 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Gabi2486g00001 437 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 22 435 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gabi2486g00001 437 FunFam CC1-like, splicing factor 152 260 - -
Gabi2486g00001 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Gabi2486g00001 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 122 IPR000504 GO:0003723
Gabi2486g00001 437 Gene3D - 31 134 IPR012677 -
Gabi2486g00001 437 Gene3D - 135 237 IPR012677 -
Gabi2486g00001 437 SMART rrm1_1 344 422 IPR000504 GO:0003723
Gabi2486g00001 437 SMART rrm1_1 158 230 IPR000504 GO:0003723
Gabi2486g00001 437 SMART rrm1_1 54 126 IPR000504 GO:0003723
Gabi2486g00001 437 SUPERFAMILY RNA-binding domain, RBD 153 249 IPR035979 GO:0003676
Gabi2486g00001 437 CDD RRM3_RBM39_like 342 424 - -
Gabi2486g00001 437 FunFam Splicing factor, CC1-like protein 338 437 - -
Gabi2486g00001 437 NCBIfam splicing factor, CC1-like family 32 435 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2486g00001 Gabi-Chr2486 2695 12338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2486g00001 54 220 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.69e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2486g00001 K13091 - gmx:100789839 658.677