Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00019 ATGGAAAACGACGACGTTGATATGCTCGGAGCAGATAATAATGAAGAATTGGATGACATGAAGAAACGCTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGCGCAAGATCCTGCTACTGCTGCTGCAAGTCAGACCAACAGAGAGGAGGTAGATGCTCGATCAATCTTTGTAGGCAATGTGGACTATTCATGTACTCCTGAGGAAGTGCAGCAGCATTTCCAATCATGTGGAACGGTAAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTTGTTGAAGTAGAGGCTGTGCAAGAGGCTCTTCTGCTCAATGAATCTGAACTACATGGCCGCCAATTGAAGGTAACTGCTAAGAGGACCAATGTACCGGGAATGAAGCAATATCGTCCCCGCCGGTCCAATCCTTACATGGGGTCTCGAGGCAGAACCCCATATGCAGCTCCTTTTGCCTATGCTCCCTATGGATTCGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGTCCCTACTATTGA 588 0.4813 MENDDVDMLGADNNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPATAAASQTNREEVDARSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQYRPRRSNPYMGSRGRTPYAAPFAYAPYGFGKVPRFRMAMRYSPYY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00019 195 MobiDBLite consensus disorder prediction 41 62 - -
Gabi2485g00019 195 SUPERFAMILY RNA-binding domain, RBD 58 165 IPR035979 GO:0003676
Gabi2485g00019 195 Coils Coil 10 44 - -
Gabi2485g00019 195 Gene3D - 7 140 IPR012677 -
Gabi2485g00019 195 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 165 - -
Gabi2485g00019 195 CDD RRM_II_PABPs 68 139 - -
Gabi2485g00019 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Gabi2485g00019 195 SMART rrm1_1 68 139 IPR000504 GO:0003723
Gabi2485g00019 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00019 Gabi-Chr2485 266837 274445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00019 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 3.20e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00019 K14396 - gmx:100784473 336.265