Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00018 ATGGAAAACGACGACGTTGATATGCTCGGAGCAGATAATAATGAAGCTGTATGTAATGAATTGGATGACATGAAGAAACGCTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGCGCAAGATCCTGCTACTGCTGCTGCAAGTCAGACCAACAGAGAGGAGGTAGATGCTCGATCAATCTTTGTAGGCAATGTGGACTATTCATGTACTCCTGAGGAAGTGCAGCAGCATTTCCAATCATGTGGAACGGTAAACCGAGTCACCATTCGTACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTTGTTGAAGTAGAGGCTGTGCAAGAGGCTCTTCTGCTCAATGAATCTGAACTACATGGCCGCCAATTGAAGGTAACTGCTAAGAGGACCAATGTACCGGGAATGAAGCAATATCGTCCCCGCCGGTCCAATCCTTACATGGGGTCTCGAGGCAGAACCCCATATGCAGCTCCTTTTGCCTATGCTCCCTATGGATTCGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGTCCCTACTATTGA 600 0.4783 MENDDVDMLGADNNEAVCNELDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPATAAASQTNREEVDARSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQYRPRRSNPYMGSRGRTPYAAPFAYAPYGFGKVPRFRMAMRYSPYY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00018 199 MobiDBLite consensus disorder prediction 45 66 - -
Gabi2485g00018 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Gabi2485g00018 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 147 IPR000504 GO:0003723
Gabi2485g00018 199 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 16 169 - -
Gabi2485g00018 199 SUPERFAMILY RNA-binding domain, RBD 62 169 IPR035979 GO:0003676
Gabi2485g00018 199 Coils Coil 14 48 - -
Gabi2485g00018 199 Gene3D - 10 144 IPR012677 -
Gabi2485g00018 199 SMART rrm1_1 72 143 IPR000504 GO:0003723
Gabi2485g00018 199 CDD RRM_II_PABPs 72 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00018 Gabi-Chr2485 266836 274447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00018 72 142 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 4.23e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00018 K14396 - gmx:100784473 330.487