Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00012 ATGTATTCCAAGTATGATTTTATTAAGGATCTTAATCCTTCTAAGGAGGAATGGAGGATTAAGGCTAGAGTTGTTAGAACATGGAAGGTTCCTAATTTTCAGCAAAAAAATTTGGACGACAACGTAGAGATGATTCTGTTAGATGAAAATGGTGGAAGGGTCCACGCTGCTATCAAGGGTTCTTTAAATATCCGTAACAAAATTCACGAAGGAGAAGTTTATTTCATAAAAATTTTTGGAGTTGGTTTGAATAGTGGGGGTTTCAGGCCAACTAAGCATGATTATCGTTTGTCCTTCAACTTGAGGACTGATGTAAAATCCACTATTGATTCTGCTATTCCCACCAATGGATTTGATTTTGTAGATTTTGACGTTATAGAGAAAGAGTCTTCTGATTCCCCTTATTTAGTAGATGTCATCGGTTTAGTTTCTGGAATGGGGGAATTTTGTGAGCATATTATCTCCGGTAGGAAGACAAAAATGGTTGTCGTGGAGCTTGATAACCTCAGGCTTTCGTCTGATGTCATTGATAGCGGTTACACGTTGTCTCAGTTATCAAGTCAGTCCTTATATTCTTTTGAGAATGATTTCCTGAAAGAGACGGAAAGGAAGTGTATCAGTGATTTTAAGAATTGCAGTGAGGTTACTACTTGCATTACTTATGGAACCATAAAATCGATTGAGAGCAAATATAAATGGTGGTACAAGTCCTGTAATAAATGTCCATATTCTGTTTATGAAGATTTCAAGAAATGGTATTGTAAAAACTGCCAAAAACATTTTGATGATTATTATCCAAAATTTTGTGTGCAGTTGAGAGTTGTGGATCACACTGATTCTGCATCTTTCATTCTGTTTGATAAAGACTGTGTTGCTTTGTTGGGCATGAGTACTGCAGATTTACGTGAGCAGCATTTCAAAAGGGGTGATGATTTCGAGCACTATCCTAAGGAACTTAATGTTCTTATTGATAAATCCATGTTGTTTAAAGTTGTGTTTTAA 1002 0.3593 MYSKYDFIKDLNPSKEEWRIKARVVRTWKVPNFQQKNLDDNVEMILLDENGGRVHAAIKGSLNIRNKIHEGEVYFIKIFGVGLNSGGFRPTKHDYRLSFNLRTDVKSTIDSAIPTNGFDFVDFDVIEKESSDSPYLVDVIGLVSGMGEFCEHIISGRKTKMVVVELDNLRLSSDVIDSGYTLSQLSSQSLYSFENDFLKETERKCISDFKNCSEVTTCITYGTIKSIESKYKWWYKSCNKCPYSVYEDFKKWYCKNCQKHFDDYYPKFCVQLRVVDHTDSASFILFDKDCVALLGMSTADLREQHFKRGDDFEHYPKELNVLIDKSMLFKVVF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00012 333 Pfam Replication factor-A C terminal domain 220 320 IPR013955 -
Gabi2485g00012 333 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Gabi2485g00012 333 Gene3D - 191 333 IPR012340 -
Gabi2485g00012 333 PANTHER OS03G0429900 PROTEIN 223 332 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2485g00012 333 Gene3D - 7 110 IPR012340 -
Gabi2485g00012 333 SUPERFAMILY Nucleic acid-binding proteins 201 331 IPR012340 -
Gabi2485g00012 333 CDD RPA1_DBD_C 218 331 IPR047192 -
Gabi2485g00012 333 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Gabi2485g00012 333 CDD RPA1_DBD_A_like 19 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00012 Gabi-Chr2485 182329 184603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00012 8 301 Core DNA Replication Machinery Family AT4G19130 22.977 2.05e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00012 - - aip:110264975 171.785