Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00011 ATGGCCATTATTCTTGGGCTGAGACTTGGCCCATTAGAAAATAGTAGGGGTCTGGCCATAATAAACTTTACAAGCGAGTGCCTTGGTGAAATCTCACAGAGGATCATACCTCAGGTTCAACAACTTTATGATTATGATCCTGGATTTATAAAACCACCCGGTTCAGAATACCTGTTCCCTTTGTTTCTGGAAATCGTCATAGATGTCCCGTCAGATGAAGAGAATCAAGTGATGGAGCGTGCAGTGATCGAAGACTCCCTCCAACATTTTAGAATGAATCCAGCATCCAAGAATGCCATCAATTCTCTAAAGAAATTCAAGATTATGAAACAGAATGAGCATTTTACTATCTGCATGGAAGAGTTCGATGTGAGTGGTGATAATGATGATGACGTGACAGCCTCCGCAATGCCCTGCAACCACGTGTTTCACCAACAATGTATTGTGAAATGGCTGCAAACTAGTCATGTGTGTCCTTTGTGTCGCTACTCTATGGCCACCGCCAACGAGCACTGA 516 0.4322 MAIILGLRLGPLENSRGLAIINFTSECLGEISQRIIPQVQQLYDYDPGFIKPPGSEYLFPLFLEIVIDVPSDEENQVMERAVIEDSLQHFRMNPASKNAINSLKKFKIMKQNEHFTICMEEFDVSGDNDDDVTASAMPCNHVFHQQCIVKWLQTSHVCPLCRYSMATANEH 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00011 171 Pfam Ring finger domain 116 162 IPR001841 -
Gabi2485g00011 171 SMART ringv_2 117 162 IPR011016 GO:0008270
Gabi2485g00011 171 SMART ring_2 116 161 IPR001841 -
Gabi2485g00011 171 ProSiteProfiles Zinc finger RING-type profile. 117 162 IPR001841 -
Gabi2485g00011 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 165 - -
Gabi2485g00011 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Gabi2485g00011 171 SUPERFAMILY RING/U-box 116 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00011 Gabi-Chr2485 166947 167911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00011 80 165 C3H Transcription Factor Family AT1G18760 36.667 6.48e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00011 - - psat:127082431 121.324