Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00006 ATGGATAATCTCTGTTGTTTCAGTTCTTTCAGTCAGGTGGTTGGAGGGCGTTCTTCATGTAACTCTGGAAAGGGCAAGAGCCATGAGTCCCCTGTCAAGTATGGCTTTAGCCTTGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCACGTAGCAAAATTCGTCCAGTTCAAAGGGCAAGAGCTAGGACTTTTTGCTATATACGACGGACACCTTGGAGACAGTGTACCAGCCTATTTACAAAAGCATCTCTTTTCTAATATCTTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTTCTAAAGCTTATGAGACAACAGATCAGGCAATTCTTTCTCACAGTCCGGATTTGGGGCGAGGAGGATCAACTGCAGTGACTGCAATTCTCATAAATAACCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGGGAGGGGTGGCTGAACAGATGAGTACTGATCATGAACCCAATACTGAACGGGGCAGCATTGAGGGTAAAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCGTTTGGAGACAAAAATCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTATGCTGATATTAATTCAGATATTGAGCTTTTGATACTCGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAGGCTGTTGATATTGCAAGAAGGACAAAGGATCCAGAAAGGGCAGCGAAACAACTAGCTACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCGTTGTAGTTCGTTTCTAG 843 0.4413 MDNLCCFSSFSQVVGGRSSCNSGKGKSHESPVKYGFSLVKGKANHPMEDYHVAKFVQFKGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWNDPFMSISKAYETTDQAILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAEQMSTDHEPNTERGSIEGKGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADINSDIELLILASDGLWKVMANQEAVDIARRTKDPERAAKQLATEALNRDSKDDISCVVVRF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00006 280 CDD PP2Cc 32 280 IPR001932 -
Gabi2485g00006 280 SUPERFAMILY PP2C-like 29 280 IPR036457 -
Gabi2485g00006 280 Pfam Protein phosphatase 2C 42 273 IPR001932 -
Gabi2485g00006 280 PANTHER PROTEIN PHOSPHATASE 28 279 IPR015655 GO:0004722|GO:0006470
Gabi2485g00006 280 SMART PP2C_SIG_2 44 280 IPR001932 -
Gabi2485g00006 280 MobiDBLite consensus disorder prediction 157 176 - -
Gabi2485g00006 280 FunFam Probable protein phosphatase 2C 39 24 280 - -
Gabi2485g00006 280 Gene3D - 17 280 IPR036457 -
Gabi2485g00006 280 SMART PP2C_4 29 278 IPR001932 -
Gabi2485g00006 280 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00006 Gabi-Chr2485 77617 83887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00006 1 280 PP2C-type Phosphatase Gene Family AT1G22280 73.077 4.90e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00006 K17506 - gmx:100776795 528.48