Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2485g00003 ATGGCGGAGCGTGCTTCTTACGGATTAGGTCCTCGATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATAGATGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAATTATCAGAAGTTTCAAATCACATCGGAACCGCCGAACAGGCCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGGTACTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAACGAGAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTCCACTACTTGAATGTTAAGATTAACAAGACAAATATTGGTGGAGGTACAGATATTGATGACATTAGATCAGATTCCCAAGAGGGCAGTTCTTCATCATCTGGCTTTCCCACAAATTATAGGAATGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACTTCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGTTCAGGATTATATTCGTTCCGTGAGTCACAAAATATGGGGAATGGTCGTCCAATGGATAAGATTGACGCTCCTTCAAATAGTTCATATCTTATGCATCCCTTTTCAGGTGGTCATGGACAGTTCTCAATTTCTGGAACAGATTATATTCCTCTTGTTCAGGGGGATAAATCTAGAGCAAGCGCTACTACATACTTTGAGCATCAGAGAGCACATGGCATGGCATCCTGGGATGTCATGGAGCAATCTGCAGGATTGCAAACTGATCCTCCTCTTGTATCATCTCCTTCCATTCCATCCAGTTCAATGGGAAATATCCTTGAGCAGGAACATACAGTTATGGGAAACATTTTAGGGAGTAAAAATACCCTTGTCGAGGAGGCAGAGGGTTCTCAGTCTCTCCTGTCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGACTCACCTAAATGGAGCTTAACCCATTCATTGAGTTTGGAATTTGGATCTGATTATTGCACTGGTTTACTGGGGGATGAAACTAATAATACAAGTCCAGAACTTGCTCCTGACATGTTCGCTTTTGATGATGAGCCAAAAGAGCAGCCTCTGCAGCAGATCTTCTCAAAGAAGCATACAGATGCACAATCTCAACATGCACTGAAATTCAATTCTGAGTATGAAGATCCTGGTGAAGAAAGTATCAACAATACCTTGATCGTGAAGCGTGCATTATTGGATGGAGAGGAGAGCCTGAAGAAGGTTGATAGCTTCTCTAGGTGGATTACTAAAGAACTTGTCGGGGTGGATGACCTGCATATGCAGTCTTCTCCGGGTATTTCATGGAGCACAGATGAATCTGGGCATGTAATAGATGATACCTCTTTGAACCTGTCCCTATCTCAAGACCAGCTCTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGCTGATTATTGGAACATTTTTGAAGAGTAAACTGGAGGTGGTAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTAAAGCTCCACCTCATCAGATTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGTTTTGCTAGAAATGTAGATATTGCAGATTTTTTTGACAGTTCAACTGAAATGCTGCTGCATTTGGGACTGGAGGAGTTACTTTCTTTAAACTCGGCGCACCCTTCAGATCAAGTGTTTGAGGAGGATACGGAGAAAAGAAACTTAATTTTTAAGCTTATTTCACTGAAAGAGGAAGAGGAGTATTCGAGTAAGGAAGAGCCAACTGTAGCGATGAATATATCAAAACATAAGTTGAAGGCGCAAATGTTTCACAGGCAGGTTAAAGAGAAGCTGTTCTCATGGCTTCTTCACAAAGTAACTGAAAGCGGTAAAGGGCCAAATGTATTAGGTAAGGATGGGCAAGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTATATCTGCTGGTGTTAATATCAACTTCCGTGATGTGAATGGATGGACGGCTCTACACTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCTACTGGAGCATTGACAGATCCATGTCCAGCATTTCTTTCAGGTAGAACACCGGCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCGGAGTCATTATTAACTAGTCACCTTGAATCACTCACAATGGATGATCTGAGTAAAGACAGTGGGAAAGAAACTTCAGGAATGAAGGCAGTGCAGACAGTTTCAGAGCGATTTGTGACACCTGTTCATTTTGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTGAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAATTAGCTCAGTGTGAACATAATGAGTTTGGGTTGTCAGATCAGCAAGCTCTTTCCCTTCTAGCTTTTAAGACATGCAACTCTGGACAAGGAGCGGGTTTAGTGAATTCTGCTGCAATAGAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAAAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGAAGTATAAATCAGTCATTTGGTCTGTGGGAATCCTGGAGAAGGTGATATTACGCTGGAGACGTAAGGGCAGGGGTTTACGTGGATTTCGACCAGATGCGCTTGATAAGGTCCCCATGCAAGCAAGCGATCCTTTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGAAAAGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAATATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTAGAGGACTTCCGTCAAACCAAGCAGGGATCCAATTTGAATTTGATAAATTCGGAAGAGACAGTTGATGGTGTAGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCGCACCTATTGCATTCGATTGA 3270 0.4202 MAERASYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYQKFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLNVKINKTNIGGGTDIDDIRSDSQEGSSSSSGFPTNYRNVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLYSFRESQNMGNGRPMDKIDAPSNSSYLMHPFSGGHGQFSISGTDYIPLVQGDKSRASATTYFEHQRAHGMASWDVMEQSAGLQTDPPLVSSPSIPSSSMGNILEQEHTVMGNILGSKNTLVEEAEGSQSLLSNWQIPFEDNTGDSPKWSLTHSLSLEFGSDYCTGLLGDETNNTSPELAPDMFAFDDEPKEQPLQQIFSKKHTDAQSQHALKFNSEYEDPGEESINNTLIVKRALLDGEESLKKVDSFSRWITKELVGVDDLHMQSSPGISWSTDESGHVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIIGTFLKSKLEVVTCNWSCMFGEVEVPAEVLANGILCCKAPPHQIGRVPFYVTCSNRFACSEVREFEYREGFARNVDIADFFDSSTEMLLHLGLEELLSLNSAHPSDQVFEEDTEKRNLIFKLISLKEEEEYSSKEEPTVAMNISKHKLKAQMFHRQVKEKLFSWLLHKVTESGKGPNVLGKDGQGVLHLVAALGYDWAITPIISAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGAATGALTDPCPAFLSGRTPADLASSNGHKGISGFLAESLLTSHLESLTMDDLSKDSGKETSGMKAVQTVSERFVTPVHFGDIPDAICLKDSLNAVRNATQAADRIHQVFRMQSFQRKQLAQCEHNEFGLSDQQALSLLAFKTCNSGQGAGLVNSAAIEIQKKFRGWKKRKEFLIIRQKIVKIQAHVRGHQVRKKYKSVIWSVGILEKVILRWRRKGRGLRGFRPDALDKVPMQASDPLKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKQGSNLNLINSEETVDGVEDLIDIDMLLDDENFAPIAFD 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2485g00003 1089 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Gabi2485g00003 1089 Pfam IQ calmodulin-binding motif 914 932 IPR000048 GO:0005515
Gabi2485g00003 1089 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Gabi2485g00003 1089 ProSiteProfiles Ankyrin repeat region circular profile. 736 761 - -
Gabi2485g00003 1089 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gabi2485g00003 1089 FunFam Calmodulin-binding transcription activator 2 911 959 - -
Gabi2485g00003 1089 Pfam IPT/TIG domain 503 588 IPR002909 -
Gabi2485g00003 1089 SMART iq_5 911 933 IPR000048 GO:0005515
Gabi2485g00003 1089 SMART iq_5 934 956 IPR000048 GO:0005515
Gabi2485g00003 1089 Gene3D Immunoglobulins 496 591 IPR013783 -
Gabi2485g00003 1089 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1050 - -
Gabi2485g00003 1089 MobiDBLite consensus disorder prediction 148 188 - -
Gabi2485g00003 1089 Gene3D - 912 958 - -
Gabi2485g00003 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 961 IPR027417 -
Gabi2485g00003 1089 Pfam Ankyrin repeats (3 copies) 708 797 IPR002110 GO:0005515
Gabi2485g00003 1089 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gabi2485g00003 1089 SUPERFAMILY Ankyrin repeat 691 797 IPR036770 -
Gabi2485g00003 1089 FunFam Calmodulin-binding transcription activator 2 496 592 - -
Gabi2485g00003 1089 MobiDBLite consensus disorder prediction 155 188 - -
Gabi2485g00003 1089 Gene3D - 664 805 IPR036770 -
Gabi2485g00003 1089 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Gabi2485g00003 1089 SMART ANK_2a 775 804 IPR002110 GO:0005515
Gabi2485g00003 1089 SMART ANK_2a 736 765 IPR002110 GO:0005515
Gabi2485g00003 1089 SUPERFAMILY E set domains 503 589 IPR014756 -
Gabi2485g00003 1089 ProSiteProfiles IQ motif profile. 913 941 IPR000048 GO:0005515
Gabi2485g00003 1089 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gabi2485g00003 1089 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2485g00003 Gabi-Chr2485 56398 67930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2485g00003 1 1063 CAMTA Transcription Factor Family AT5G64220 52.011 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi2485g00003 CG-1 3.7e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2485g00003 K21596 - gmx:100795682 1704.49