Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2484g00015 ATGGCCGAAGCAGAGCACAAATCACCTGAGTCTGAGGATCAAACTAAGAATAAGAAACTGCGCAAGAGGAAAAGACCTCGTAAGACTGAGCAGCGAGAAGAGGAGAATGGCGATGCGGAATCTGCCGAAGAGGAGCAGAAGAAGGATGAGAAGTTTGAGAGTGGGCAACAACAACAAACTGAAGAAGATGGTGATGATGAAGAAGGGGAATATAAAAAAGTGAAGAACGTTGCTACTGGAATTATGAGCGCTGAATCTTTTGCGTCTCTGGGACTGTCTGAACCTACTTCTAAGGCTATTTTGGATATGGGTTTCCAGCGTATGACTCAGATTCAAGCGAGAGCGATTCCGCCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCCAGGACAGGTGCTGGAAAAACTCTTGCCTTTTTAATTCCAGCTGTGGAATTGTTGTACAACATTCAGTTTACTCCTCGTAATGGAACCGGTGTTGTTGTCATATGCCCTACAAGAGAACTTGCGATTCAGACACATGCTGTGGCAAAGGAACTACTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGTAGAAAAGGAGAAGCTGAGCGCATTGTTAAAGGCGTAAACCTGTTGGTTGCAACTCCTGGTCGTCTTCTTGATCACCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAATGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATTTACTTCCAAAGAAAAGACAAACAGCTTTGTTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCGTTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTTACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAATGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGGACAACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTTTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCTAAGGAATACATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCGATTTCTTCACTATTTGAAGGCAGCAAAGGTCCCTGTGAAAGAGTATGCATTTGATGACAAGAAGCTTGCAAATATACAGTCTCAACTGGAGAAGTTGGTGGCTAGCATTTATCATTTGAACAATATGGCTAAAGAGGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTCACAAACCCACCGAAGGTCAATCTGAATATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAATTGTAA 1638 0.4139 MAEAEHKSPESEDQTKNKKLRKRKRPRKTEQREEENGDAESAEEEQKKDEKFESGQQQQTEEDGDDEEGEYKKVKNVATGIMSAESFASLGLSEPTSKAILDMGFQRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLIPAVELLYNIQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINLLPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELRFLHYLKAAKVPVKEYAFDDKKLANIQSQLEKLVASIYHLNNMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFTNPPKVNLNIDSSASKHRKKIRKL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2484g00015 545 Gene3D - 302 543 IPR027417 -
Gabi2484g00015 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 475 IPR001650 -
Gabi2484g00015 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 447 IPR027417 -
Gabi2484g00015 545 CDD DEADc_DDX18 96 293 IPR044773 GO:0003724|GO:0005524
Gabi2484g00015 545 Gene3D - 4 295 IPR027417 -
Gabi2484g00015 545 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2484g00015 545 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 237 245 IPR000629 -
Gabi2484g00015 545 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 113 IPR014014 GO:0003724
Gabi2484g00015 545 Pfam DEAD/DEAH box helicase 109 280 IPR011545 GO:0003676|GO:0005524
Gabi2484g00015 545 FunFam RNA helicase 302 532 - -
Gabi2484g00015 545 Pfam Domain of unknown function (DUF4217) 467 527 IPR025313 -
Gabi2484g00015 545 SMART ultradead3 104 309 IPR014001 -
Gabi2484g00015 545 MobiDBLite consensus disorder prediction 1 71 - -
Gabi2484g00015 545 Pfam Helicase conserved C-terminal domain 321 425 IPR001650 -
Gabi2484g00015 545 CDD SF2_C_DEAD 306 436 - -
Gabi2484g00015 545 MobiDBLite consensus disorder prediction 27 58 - -
Gabi2484g00015 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 291 IPR014001 -
Gabi2484g00015 545 SMART DUF4217_3 466 529 IPR025313 -
Gabi2484g00015 545 SMART helicmild6 345 426 IPR001650 -
Gabi2484g00015 545 PANTHER RNA HELICASE 32 468 - -
Gabi2484g00015 545 Coils Coil 535 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2484g00015 Gabi-Chr2484 306356 314344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2484g00015 85 444 Eukaryotic Initiation Factors Gene Family AT3G13920 32.329 1.57e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2484g00015 K13179 - gmx:100798290 931.013