Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2484g00013 ATGGAGCCCATGGACATCGTGGGGAAAACAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCTGACGTGCGTGTTGCAAGAGACGCTCAGGATTTGTTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCATCAGAGTCCAATGAAGTCTGTAGCAGAGAGGAAAGAAGGACGATTGCACCTGAGCACGTATTGAAGGCTTTAGGGGTACTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAACTGGAGACAGTGGACACTTTAAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAGCAGCAGAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGAGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAACTTTAGAGAGCTAA 468 0.4637 MEPMDIVGKTKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETVDTLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDADQTLES 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2484g00013 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Gabi2484g00013 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Gabi2484g00013 155 Coils Coil 114 134 - -
Gabi2484g00013 155 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
Gabi2484g00013 155 FunFam Negative cofactor 2 beta 6 142 - -
Gabi2484g00013 155 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2484g00013 Gabi-Chr2484 227995 232819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2484g00013 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 80.392 8.68e-88 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi2484g00013 CBFD_NFYB_HMF 2.4e-22 CL0012