Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2484g00005 ATGGGTGGTCATAAAAGGAAGCACCACTTCAGCAGAATCCATGCATTCTCATGTGGGAAAGCATCTTTCAAAGGTGAACATTCACTAATAGGAGGCCCTGGCTTCTCAAGGATAGTGTACTGCAACGAACCAGAACATGCTGAAGGGATTCTTCTTAATTATGGTGACAATTATGTCAGAACTACTAAATATACACTTGCTACTTTCCTACCCAAGTCCTTGTTTGAGCAATTCAGGAGAGTTGCCAATTTTTACTTCCTTGTTTGTGGAATCTTGTCGTTCTTTCCAGTATCTCCTTATTCAGCCATCAGCAATGTAGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCAGTTGAGGATTGGAGGAGGAAAAAGCAGGATATCGAGATGAATAACAGAAAGGTTAAAATGCATCGTGGAGAAGGTGTTTTTGAGTATTCTAAATGGAAAGATTTGAAAGTTGGAGACATAGTAAAGGTTGAAAAAGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGACGATGCAATTTGCTACGTTGAGACCTTGAATCTTGATGGAGAAACAAATCTTAAGCTGAAACAAGCACTGGAAGAAACTTCAAAGTTGCAAGAAGACTCAAGCTTCCAAAATTTTCAGGCTATCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCATTTATAGGCAGCCTTGATCTCCAAGATCAACTGTATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGACTCAAAGCTGAAGAACACAGATTTTATCTATGCTGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAATTCTACAGAGCCTCCATCAAAGAGAAGCAAAGTTGAGAAACGGATGGATAAGATCGTCTACTTTCTGTTCTTTGTCTTATTTTTTATTTCTTTTATTGGTTCTATTTTCTTTGGGATTGCAACAAGAGAGGACCTTGAAAATGGTGTAATGAAGAGATGGTACCTTAGACCAGATGATACCACAATTTACTATGATCCAAAGAAAGCACCAGTTGCAGCCATTCTGCATTTCTTGACTGCACTTATGTTGTATAGTTACTTGATTCCGATATCATTGTATGTCTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGATGTTCACATGTATTATGGGGAAACTGACCAGCCAGCACATGCTCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTGTCAAGTGTTCTATTGCTGGCATTCCCTACGGACGAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGGAGAAAAGGATTACCTTTAGGACAAGAGCTGACAGAAGATGACAATGTTGCTGAGATTTTTGAAGCAAAGTCATCTGTTAAAGGTTTTAACTTCATGGATGAAAGGATCATGAATGGAAATTGGGTCAAAGAACCTCATGCCAATGTAATCCAGAACTTCCTGCGGTTGTTGGCAGTATGTCATACTGCAATACCTGAAATTGAAGAAGAAACTGGCAAAGTTTCTTATGAAGCTGAGTCCCCTGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAACTTGGATTTGAGTTTTATGAAAGGACACAGACAACTATTTCGCTTCGCGAATTCAATTCCACATCAGGCAAGACAACTAGAAGGTCCTACAAACTTTTAAATATATTAGATTTTAGTAGTGCAAGAAAGCGGATGTCTGTAGTTGTAAGAGATGAGGAAGGGAAACTACTACTACTTAGCAAAGGTGCTGACAGTGTCATGTTTGAACGACTTGAAAAGAATGGAAGGGAGTTTGAAGAGAAGACTATGCAGCACATCAATGAATATGCTGATGCTGGCTTGAGGACCTTGGTACTTGCATATCGCGAACTTGATGAGGAAGAGTACAATCTATTTAATAAAGAGTTTATGGAGGCCAAGAACATAGTGAGTGCAGACCGAGAGCAAATTGTAGAGGAAATATCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGATAAACTTCAAAATGGGGTTCCTGAGTGCATTGACAAGTTAGCACAGGCAGGAATTAAGCTATGGGTTTTGACAGGTGATAAAATGGAGACAGCAATTAATATTGGTTTTGCTTGTAGTTTACTCAGACAAGGAATGGAGCAAATTATAATTAGTTCAGACACGCCAGAAACCAAATCACTGGAGAAAGTGGAGGACAAGTCTGCTGCTGCAGCGGCAATTAAGGAAAGTGTTCTTCGACAATTAAGGGAAGGAAAGGCATTACTTGCTGCATCTGATGAAAACTCCGAGGCATTAGCTCTTATCATTGATGGAAAGTCTCTCTCTTATGCACTAGAAGATGATGTCAAGGACTTGTTTCTTGCACTTGCTGTTGGCTGTGCATCTGTTATATGCTGCCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACTGGTTGTACAACTCTAGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGGATTGGTATAAGTGGTGTAGAAGGAATGCAGGCAGTTATGTCAAGTGATGTCGCAATTGCCCAATTCCGATTTCTAGAGCGTTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGAATCACATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTTGGCTTCACACTATTCTTCTATGAGATCTATGCCTCATTCTCGGGGCAAGCTGCATACAATGATTGGTTCCTGTCACTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTGCTAGATTCTGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTCCTATTTAGCTGGAAAAGGATTCTTGGCTGGTCATTCAATGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTCCATCAATGCAATGGAACATCAAGCATTCCGCAAAGGAGGGGAAGTTGTGGGACAGGAAGTTCTTGGTGCCACCTTATACACATGTGTTGTGTGGGTCGTGAATTGCCAAATGGCATTATCTATTAGTTACTTCACTTACATACAACATATATTCATCTGGGGTGGCATTCTTTTTTGGTATACATTCCTCCTAGCTTATGGAACCATGGACCCCTCCTTATCAACCACTGCCTATAAGGTCTTAATTGAAGCTTGTGCACCAGCACCATCTTATTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATATTTTGCCTATGCTTCAATCCAAATGCGGTTCTTCCCTATGTTCCATCAAATGATACATTGGATACAAAATGATGGGCAAGCAACTGACCCAGAATATGTTAATGTTGTGAGGCAAAGATCAATAAGACACACAACAGTTGGGTTCACAGCTCGTTTTGAATCATCCCAAAGTTTGGAAGCATCCAAGAGTTTTAAAGTCTGA 3582 0.4001 MGGHKRKHHFSRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNEPEHAEGILLNYGDNYVRTTKYTLATFLPKSLFEQFRRVANFYFLVCGILSFFPVSPYSAISNVVPLVVVVAATMGKEAVEDWRRKKQDIEMNNRKVKMHRGEGVFEYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETLNLDGETNLKLKQALEETSKLQEDSSFQNFQAIIKCEDPNANLYSFIGSLDLQDQLYPLAPQQLLLRDSKLKNTDFIYAVVIFTGHDTKVMQNSTEPPSKRSKVEKRMDKIVYFLFFVLFFISFIGSIFFGIATREDLENGVMKRWYLRPDDTTIYYDPKKAPVAAILHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDVHMYYGETDQPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGIPYGRGVTEVERALARRKGLPLGQELTEDDNVAEIFEAKSSVKGFNFMDERIMNGNWVKEPHANVIQNFLRLLAVCHTAIPEIEEETGKVSYEAESPDEAAFVIAARELGFEFYERTQTTISLREFNSTSGKTTRRSYKLLNILDFSSARKRMSVVVRDEEGKLLLLSKGADSVMFERLEKNGREFEEKTMQHINEYADAGLRTLVLAYRELDEEEYNLFNKEFMEAKNIVSADREQIVEEISEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMEQIIISSDTPETKSLEKVEDKSAAAAAIKESVLRQLREGKALLAASDENSEALALIIDGKSLSYALEDDVKDLFLALAVGCASVICCRSSPKQKALVTRLVKIKTGCTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDVAIAQFRFLERLLLVHGHWCYRRITSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKFPLLYQEGVQNVLFSWKRILGWSFNGVLSATIIFFFSINAMEHQAFRKGGEVVGQEVLGATLYTCVVWVVNCQMALSISYFTYIQHIFIWGGILFWYTFLLAYGTMDPSLSTTAYKVLIEACAPAPSYWLITLLVLVASLLPYFAYASIQMRFFPMFHQMIHWIQNDGQATDPEYVNVVRQRSIRHTTVGFTARFESSQSLEASKSFKV 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2484g00005 1193 NCBIfam phospholipid-translocating P-type ATPase 54 1145 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi2484g00005 1193 Gene3D - 698 901 IPR023214 -
Gabi2484g00005 1193 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 483 699 IPR023299 GO:0000166
Gabi2484g00005 1193 Gene3D - 564 697 IPR023299 GO:0000166
Gabi2484g00005 1193 CDD P-type_ATPase_APLT_Dnf-like 56 1021 - -
Gabi2484g00005 1193 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 1139 IPR023298 -
Gabi2484g00005 1193 SUPERFAMILY Calcium ATPase, transduction domain A 139 283 IPR008250 -
Gabi2484g00005 1193 Pfam Cation transport ATPase (P-type) 528 623 - -
Gabi2484g00005 1193 FunFam Phospholipid-transporting ATPase 115 285 - -
Gabi2484g00005 1193 NCBIfam HAD-IC family P-type ATPase 825 944 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2484g00005 1193 SFLD p-type atpase 405 912 IPR044492 -
Gabi2484g00005 1193 SFLD C1.7: P-type atpase like 405 912 - -
Gabi2484g00005 1193 SUPERFAMILY HAD-like 418 916 IPR036412 -
Gabi2484g00005 1193 FunFam Phospholipid-transporting ATPase 697 901 - -
Gabi2484g00005 1193 FunFam Phospholipid-transporting ATPase 539 697 - -
Gabi2484g00005 1193 Gene3D - 112 285 - -
Gabi2484g00005 1193 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 32 1152 - -
Gabi2484g00005 1193 Pfam Phospholipid-translocating P-type ATPase C-terminal 889 1139 IPR032630 -
Gabi2484g00005 1193 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Gabi2484g00005 1193 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Gabi2484g00005 1193 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Gabi2484g00005 1193 Pfam Phospholipid-translocating ATPase N-terminal 39 104 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2484g00005 Gabi-Chr2484 95677 102786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2484g00005 9 1183 Primary Pumps ATPases AT1G68710 70.456 0.0 1806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2484g00005 K01530 - gmx:100797039 2105.1