Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00027 ATGCTCCAAACTGGTTCAAAGAGATGTTTTTGCCTTTGTCTTGTGGTTGTTTCCTTGTTATTGTTCATTCCAAACACACATGAATTACAAGCAGCTCAGACACAAGCCTTGTTACAGTTAAGGATTTATCTTGAGTACCCTGCTTCATTGCAAATTTGGGGAAATTACAATGGAGATTTCTGTAGTCTTTCTTCATCTGCACATATGAGCATTAAATGTGAAGATGATACAGTAACTGAGCTTGAAATTATGGGTGATAAACTTGTAAATGCATCATGGTTCAATGGATTTGCAGTTCCCAATCAGACACTATCGGTGAATTTCTCTATTGATTCTTTTTTTACCACGTTGACAAGGTTAACCAGCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGACTTTGGGGGCCACTTCCTGATAAGATTCACCGTTTATCTTTGCTTGAAGTTTTGGACTTGAGTTCAAATTTCTTATTTGGTGCTATCCCACCGAAAATATCTACAATGGTAAAGCTTCATGCACTAACACTTGATGAGAATTATTTTAATTCCAGTAGTCCTGATTGGTTTGATTCATTGTCTAATCTAAATATCTTGAGTTTGAAGAGCAACAGATTAAAGGGTTCATTCCCCTCTTCACTATGCAAAGTTAAGACACTTCAAGTTATTTCCTTGCCTCACAATGAGCTTTCTGGTGGATTACCTGATCTTAGTACCCTCAATGGCCTACATGTTCTGGATTTAAGAGAAAATCATTTAGAATCTGAACTACCATTGTTGCCAAAAGGAGTAATCACTGTTCTGCTGAGCAAAAACTCATTCTCAGGTGAGATACCTAGGGAGTATGGTGAATTGGATCAGCTTCAACATCTAGATCTTTCATCAAATCATCTCAGTGGGATACCCCCATCTTCCTTATTCTCTTTGCCAAACGTAAGTTATTTGAATCTAGCAAGCAATGTGCTAAGTGGGTCCCTTTCTGACAAACTTAGTTGTGGCACCAAACTTGGGTTTGTGGATATTTCTAGTAACAAGTTACATGGTGGACTTCCTTCTTGCTTGGCCAATACTTCTAATAGTAGAGTTGTCAGATATGGTGGAAACTGTTTATCTTTTGATTCTAGGACTCAGCAAAGAGGGTCTTATTGTAAAGAATCCAATTCAATATGGAAGAAATTCAAGGCATGGAAAGTAGCTGTAGCAGTGGCCATCATTGTTGGACTTGTTCTTGTGCTTTTGGTGTCTGGAGTTTTCTTATGTAAAAAATACCATTCAAGAAAGGCAACTAGGAAGGATATGTTGCTTAAGATTGTTCACGATAACTCCACAACTGGGGTTTCATCTGAACTCCTCGCAAATGCCAGATTCATTTCTCAAACAGTGAAGCTAGGGACACAAACTACTCCAACCTGTCGACAATTTTCAATAGAAGAGTTGAAGGGAGCAACAAAAAGTTTTGATTTGTCAACTTATATTGGTGAAGGCTCCATAGGGAAGCTGTACAAAGGTAAACTAGAGAATGGATCCTATGTGGTGGTACGATCTTTGGCTCTGTCAAAGAAATGCTCAATTCAAAATCTTAAAGCTAGGTTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTTACCCTTTTGGGTCATTGTATTGATGGTGGTGGACAAGATGATTCCAGCCCCCGCAAACTTCATCTTGTATATGAGTATGTGCCAAATGGAAATTATCGTACCCATTTGTCAGAATTTTCTACAGAGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCAGGTTGTTTTAATAACCAACTAAAGACCAAGAATGTCTTACTTGATGAACACCGCATTCCAAAACTAAGTGACTATGGTATGTCCATCATCACTGAAGAAATCGAAAAGCATGGGGCAAAGGGTGAGAAGCGAAAATCATGCAGTCAAAGGACAAAAGCGGAGAATGATGTTTATAATTTCGGATTCATATTGTTTGAATCACTTGTTGGACCCATAGCAAGTGACAAAGGTGAAGCATTTTTTCTAAATGAAAAGGCATCCTTTGGGAGTCAAGATGGTAGAAGAAAGATTGTGGATCCAGTAGTGTTGACCACTTGCTCTCAAGAGTCATTATCAATTGCAATTTCTATAACAACCAAATGCATATCTCCAGAATCTTCATCTCGCCCATCTTTTGAGGATGTCCTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGACCAGAAATCAGATTCTTACATCATAGGTCCAAGTTTGTAG 2331 0.3857 MLQTGSKRCFCLCLVVVSLLLFIPNTHELQAAQTQALLQLRIYLEYPASLQIWGNYNGDFCSLSSSAHMSIKCEDDTVTELEIMGDKLVNASWFNGFAVPNQTLSVNFSIDSFFTTLTRLTSLRVLSLVSLGLWGPLPDKIHRLSLLEVLDLSSNFLFGAIPPKISTMVKLHALTLDENYFNSSSPDWFDSLSNLNILSLKSNRLKGSFPSSLCKVKTLQVISLPHNELSGGLPDLSTLNGLHVLDLRENHLESELPLLPKGVITVLLSKNSFSGEIPREYGELDQLQHLDLSSNHLSGIPPSSLFSLPNVSYLNLASNVLSGSLSDKLSCGTKLGFVDISSNKLHGGLPSCLANTSNSRVVRYGGNCLSFDSRTQQRGSYCKESNSIWKKFKAWKVAVAVAIIVGLVLVLLVSGVFLCKKYHSRKATRKDMLLKIVHDNSTTGVSSELLANARFISQTVKLGTQTTPTCRQFSIEELKGATKSFDLSTYIGEGSIGKLYKGKLENGSYVVVRSLALSKKCSIQNLKARLDLLSKLQHPNLVTLLGHCIDGGGQDDSSPRKLHLVYEYVPNGNYRTHLSEFSTEKALKWSDRLAILIGVAKAVHFLHTGVIPGCFNNQLKTKNVLLDEHRIPKLSDYGMSIITEEIEKHGAKGEKRKSCSQRTKAENDVYNFGFILFESLVGPIASDKGEAFFLNEKASFGSQDGRRKIVDPVVLTTCSQESLSIAISITTKCISPESSSRPSFEDVLWNLQYAAQVQATADADQKSDSYIIGPSL 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00027 776 Gene3D Ribonuclease Inhibitor 264 374 IPR032675 -
Gabi2483g00027 776 SUPERFAMILY Protein kinase-like (PK-like) 465 751 IPR011009 -
Gabi2483g00027 776 Gene3D Phosphorylase Kinase; domain 1 447 568 - -
Gabi2483g00027 776 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Gabi2483g00027 776 Pfam Protein tyrosine and serine/threonine kinase 487 748 IPR001245 GO:0004672|GO:0006468
Gabi2483g00027 776 SMART LRR_typ_2 144 168 IPR003591 -
Gabi2483g00027 776 SMART LRR_typ_2 308 332 IPR003591 -
Gabi2483g00027 776 SMART LRR_typ_2 239 262 IPR003591 -
Gabi2483g00027 776 SMART LRR_typ_2 284 307 IPR003591 -
Gabi2483g00027 776 SMART LRR_typ_2 192 216 IPR003591 -
Gabi2483g00027 776 Gene3D Transferase(Phosphotransferase) domain 1 569 772 - -
Gabi2483g00027 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 30 261 - -
Gabi2483g00027 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 448 568 - -
Gabi2483g00027 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 569 770 - -
Gabi2483g00027 776 Gene3D Ribonuclease Inhibitor 30 263 IPR032675 -
Gabi2483g00027 776 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 263 387 - -
Gabi2483g00027 776 ProSiteProfiles Protein kinase domain profile. 485 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2483g00027 776 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 334 752 - -
Gabi2483g00027 776 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Gabi2483g00027 776 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Gabi2483g00027 776 SUPERFAMILY L domain-like 102 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00027 Gabi-Chr2483 255340 261425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2483g00027 12 699 Miscellaneous Gene Families AT5G14210 58.023 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi2483g00027 PK_Tyr_Ser-Thr 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00027 - - gmx:100799183 1173.69