Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00016 ATGGATGTTCTTTATTCAGAACCATCTTCATTTAGTGAAATGCATACTTCAAAAAGTGAATATGATGATGAACAAATTGTGTCACCAATAATTGTGACTAAAGAACAAGATGGATATGAGCCAAAAATTGGAATGATGTTTTCATCTGAAGACGAAGCTTATGAGTTCTATAATGAATATGCTAAATTGACTGGATTTTCTGTGAGAAAATCACAATATCGAAGATTAGCAAATGGAACCATAAGTCAAAGAACATTTGTTTGTGGAAGGGAAGGATATAGAAGGTTGAAGGACCCTTTACATGTGAACAAGGTAAATAGGAGAGAAACAAGAACGGGTTGTCCAGCAATGATATGCTTTAAAATTGAGAAGGATACTTGGATAATTTCTAAATTTATTCCAGATCATAATCACGATCTTGTAAAATCATGTGCACGAGCTATGTTGAGATCCCAAAGGCATGTAGTTGAAGCACATACTCATATGATTCAAAATATGGACAATGCTGGTATAAAGCCATGCGGTATGTATTCTTATTTTGTTGAGGTTGCTAGAGGAGCCCAAAATGCTGGATTTTTAAAACATGATTGTGACAATTTTCTACAAGGCAAAAGAAACAACACTCTCGAAGCAGGAGATGCTCAAAGTGTTATTAATCATTTCAAAAGTTCACAAGCAAATGATCCTTCTTTCTTCTATACAATACAAGTAGATTGTGAAAATCGCATGACTAATTTTTTCTGGAGAGATGGCATATCAAGGACAGATTATAGTCACTTTGGAGATGTAGTCATTTTTGACATAACCTACCGAACAAACAAGTATAATATGGCTTGTGCACCATTCATTGGGGTAAATCATCATAAACAAAGTGTTTTGTTTGGTTGTGCTTTCTTGTTAGATGAGACTACAGAATCATTTGTTTGGCTATTTGAATCATTTTTGGAAGCAATGGGCGGGCTGCATCCTAAAACAATTTTTTCTGATCAGTGTCAAGCAGTGGCCAATGCTATTAAAAGAGTTTTTCCTGAATCTCAACATCGACTCTGCTTGTGGCATATTAGCCAAAATGCTAAAGAACAACTTTCATATTATCTGAGACAACCCGACTTTAAGGTTCTATTTAATAGGTGTTTATACAATTGTGGATCAGAGCAAGAGTTTGAAGAAGTGTGGGCCTGTTTGCTCACAAAAGTTGATATTTCAAAATGCTCATGGTTGAAGAAATTTTATGAATTACGAGCAAATTGGTGCCCAGCATTTAGTAAGAATTATTTCTCAGCTGATATCTTATCAACACAAAGAAGTGAGAGTATGAATAATATTTTTCGTACTGTTACCTGCAAGACAACGTCTCTTACCCAATTTGTGCTTCGTTATGAAAAAGTTTTGGAGCGCTGGCGTTGGTCAGAATTGCAAAAAGACTTCGAGTGCAATCAATCTGCACCTCCTAGAATAAAAAATCTTGCGGGTATAGCTGAACAAGGTGCTCGGGTATATACTCATGTTATTTTTGAAGATTTCTATGAAGAACTGTTTGAATCTTTAGCTCTGGCAATTGAAAAAATCAATGAAAATGGTACTTTCTTCAGTTATAAATTGGTGAAGTCTGGTGATGACAAACAATATTTTGTGACATTTGAATCTGCAAATTGCTTAGTTGATTGTTCTTGTAAGAAGTTTGAATCAGTTGGCCTTTTATGTCTTCATGCATTAAAAGTGCTTAACTTTCACAATATTTTTCACATACCTTCTCAATATATCTTGAAGAGGTGGAGAAAAGATGCTAAAGATGGTTTTAGTCCAAGTGATAATGATAAACAAGCTTGTGAGTTTTTAGCACAAAAAATTAATCTGCGAATGAGTCAAATAATGAGGAAAGCCATTTATTTTGCAACCAAAGGTGCATTGACAAATGAAGCAACCAAAATGGCTGAAGATCACCTAGAGCATGGGATAAAAAGCTTGGAGAGGATGTTCAAAAACACTAATTTGATTGATACATTAACTAGCAAACCCACTGAAGTTGATGATATGAATATTGATGAAGAGCTTAGTAAATTCAATTCTAAAAAAGTGTTAGATCCGCAACGTGTTCGAGCAAAGGGAGTTACAAATGCTAGACTGAAAAGTCTATTGGAGAAGAAAAGGTGCAAAAAAAATATATCACAAGCTCATAGTAACTCTCAGGGTGCTAATGCATCACTTCCCGAGTGTAATCATGCAGATAAAGGCATAGCTTCAAGTTCAAAAGACACAGATTTTAGTACTTTTGCTACACCTCAATTGGCTTTTTGTTTTCCATATCTCTCTCAAGTGGCAAGTGCTAATACACCTCCATCAAGTTTTTGTTTTCCACATATCTCTCAAGTTTCATGTACAGAGCAATCTTCTGCAAATGGGCCAGACAAACCATGA 2418 0.3515 MDVLYSEPSSFSEMHTSKSEYDDEQIVSPIIVTKEQDGYEPKIGMMFSSEDEAYEFYNEYAKLTGFSVRKSQYRRLANGTISQRTFVCGREGYRRLKDPLHVNKVNRRETRTGCPAMICFKIEKDTWIISKFIPDHNHDLVKSCARAMLRSQRHVVEAHTHMIQNMDNAGIKPCGMYSYFVEVARGAQNAGFLKHDCDNFLQGKRNNTLEAGDAQSVINHFKSSQANDPSFFYTIQVDCENRMTNFFWRDGISRTDYSHFGDVVIFDITYRTNKYNMACAPFIGVNHHKQSVLFGCAFLLDETTESFVWLFESFLEAMGGLHPKTIFSDQCQAVANAIKRVFPESQHRLCLWHISQNAKEQLSYYLRQPDFKVLFNRCLYNCGSEQEFEEVWACLLTKVDISKCSWLKKFYELRANWCPAFSKNYFSADILSTQRSESMNNIFRTVTCKTTSLTQFVLRYEKVLERWRWSELQKDFECNQSAPPRIKNLAGIAEQGARVYTHVIFEDFYEELFESLALAIEKINENGTFFSYKLVKSGDDKQYFVTFESANCLVDCSCKKFESVGLLCLHALKVLNFHNIFHIPSQYILKRWRKDAKDGFSPSDNDKQACEFLAQKINLRMSQIMRKAIYFATKGALTNEATKMAEDHLEHGIKSLERMFKNTNLIDTLTSKPTEVDDMNIDEELSKFNSKKVLDPQRVRAKGVTNARLKSLLEKKRCKKNISQAHSNSQGANASLPECNHADKGIASSSKDTDFSTFATPQLAFCFPYLSQVASANTPPSSFCFPHISQVSCTEQSSANGPDKP 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00016 805 SMART 26again6 554 581 IPR006564 GO:0008270
Gabi2483g00016 805 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 658 IPR031052 GO:0006355
Gabi2483g00016 805 Pfam MULE transposase domain 263 357 IPR018289 -
Gabi2483g00016 805 Pfam SWIM zinc finger 551 576 IPR007527 GO:0008270
Gabi2483g00016 805 ProSiteProfiles Zinc finger SWIM-type profile. 543 579 IPR007527 GO:0008270
Gabi2483g00016 805 Pfam FAR1 DNA-binding domain 55 141 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00016 Gabi-Chr2483 146584 158890 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi2483g00016 MULE 4.2e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00016 - - qsu:111986657 637.876