Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00012 ATGGCAATGGTGAATGATGGTAACAATGATGATATAGGAGACACGTTTCCGATAGGAATGCGTGTTCTTGCTGTTGATAACGACCGAGAAAGCCTTTTCAATTTAAAGACTATGCTCCGAAGGTGTCAATTCCAAGTAACAACGTCTACAGATGCAACGACAGTACTGAGGATGTTGAGAGAAAACAAGTTTGACATTGTAATCAGTGAACTTTACATGCCTGAAATTGAAGGACTTAAGCTGCTTAAGCTCATGCAACCTATGGACATACCTGTTATATTGTGCTCCAATGATTATGACAGAAAGTTGACGATGGAAGCAGTTAATCTGGGAGCATGTGATTATTTGCAGAAACCAATTAGAATTGAAGAGCTGCAGAATATTTGGCAGCATGTATTCAGAAAGAAGATTAATTCTAAGAAGCAGGAAGAAAAGATAAATTCTAAGAAGCAGGAAGAAAATGAGAATAACGACTATAAAGAGCCTGGTCATAACATGGAGCACCCTTCAACACAAAAGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAGAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTAACTAAACAAGTTCTTCAAGTGATGAACGTTGAGGAGCTTACTAGGGCGAATGTGGCCAGCCATCTTCAGTATTATAGACGAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCCTCTTCATCTGGTGGGATGATTAGAGGATTGGACACTCCTGTTGCTCTGTATGTGCCAGAGTTGTCTTATTCTGCAACTCTTCAATTGGATCTTGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTATAG 885 0.4 MAMVNDGNNDDIGDTFPIGMRVLAVDNDRESLFNLKTMLRRCQFQVTTSTDATTVLRMLRENKFDIVISELYMPEIEGLKLLKLMQPMDIPVILCSNDYDRKLTMEAVNLGACDYLQKPIRIEELQNIWQHVFRKKINSKKQEEKINSKKQEENENNDYKEPGHNMEHPSTQKKHRVIWTEELHQSFLAAVNQLGGVDKAVTKQVLQVMNVEELTRANVASHLQYYRRSLNKISSKPTQQVNNVSAFRSSSSGGMIRGLDTPVALYVPELSYSATLQLDLAQNLNNSTNDQRNL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00012 294 MobiDBLite consensus disorder prediction 140 172 - -
Gabi2483g00012 294 CDD REC_typeB_ARR-like 22 133 - -
Gabi2483g00012 294 Pfam Response regulator receiver domain 22 127 IPR001789 GO:0000160
Gabi2483g00012 294 Gene3D - 20 166 - -
Gabi2483g00012 294 SUPERFAMILY CheY-like 19 143 IPR011006 -
Gabi2483g00012 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 174 228 IPR006447 GO:0003677
Gabi2483g00012 294 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 243 IPR045279 GO:0009736
Gabi2483g00012 294 FunFam Two-component response regulator 170 234 - -
Gabi2483g00012 294 Coils Coil 134 154 - -
Gabi2483g00012 294 Gene3D - 170 234 - -
Gabi2483g00012 294 ProSiteProfiles Response regulatory domain profile. 21 133 IPR001789 GO:0000160
Gabi2483g00012 294 SMART REC_2 20 129 IPR001789 GO:0000160
Gabi2483g00012 294 SUPERFAMILY Homeodomain-like 171 232 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00012 Gabi-Chr2483 94023 99311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2483g00012 14 245 Response Regulator Gene Family AT4G31920 50.820 4.92e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2483g00012 Response_reg 2.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00012 - K14491 gmx:100777171 263.462