Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00010 ATGTCCTCAAAATACGACTTCGTAAAGGATCTTAATCCGACGAAAGAAGAATGGAGGATTAAAGTGCGTGTAGTTAGATATTGGAAGGTTCCCAGTTTTAATCAAAAAGATTTTGATGACAATGTGGATATGGTTTTGGTCGACGAACGGCTCATTGTCAGTTTTGTTGTTGTTGTTGTTGTTGTTGCGTGTTTTCATTTTATAGGGTGGAAGGATCCATGTTACGGCCAAGGGCCAACACGACATGAATATCATCTGTCTTTCAACTTGAGGACGGACGTGAAATCCATTGTTGATGCTAAGATTCCTGAGCGTGGTTTTGATTTTGCTGAGTTTGACGTTATTGAGAAAGAATCCTCTGACTCTCCTTATTTAATAGGTGATGGGATTGGTGTATTGTGTTATGCGCTTTCAATTAAGATTTTGTATATAGGACGTAAGGCTGAAACCCATGTTATTTGTTGTGTAGACGTCATTGGTTTGCTGTCTGGAATTGGGGAAGTACGTGAACATGTCATCTCTGGTAGGAATACAAAAATGGTTGTCGTGGAGCTTGACAACCTGAGGGGTCAGAAACTTGAATGCACTTTGAGGGAGTCATACGTAGACGAGGTCCAAACTTTCTTAGCAAAGAATCAGAGTGCTCAAAATGTTATAATACTTCAGCTTGCAAGGATAAAGGGTTTTAGGGGGTTTCCGAGGAAATTTCTTACTGATATTAAGAATTGCATAGATGCTACTACTTGCATTACTTATGGAATTGTAAAATCCATTGAAAGTAAATACAACTGGTGGTACAAGTCCTGTAAAGAATGTCCATATTCAGTGTGCGAAGATTTTGAGAAATGGTATTGTAAGAACTGTCAGAAACATTGGAATGAATATACTCCGAAGTTTAGTGTTCAAGTCAGAGTTGTTGATAACACGGATTCTGCTTCTTTCGTACTATTTGATAGAGACTGTCTTTCTTTATTAGGAGTGAGTGCTGCTGAATTGCGCGAGCAACATTTTAAGCGGGGTGCAGATTTAGAACATTATCCGGAAGAGTTGAACGTTCTTAAAGATAGATCTATGTTGTTTAAAGTGAATGTCAAAATTAGCAATTTGAACTCATACAGTGAGCCAAAATATCATGTGGCCAAAGTTTGCATCAGTGAGAGTATTATCACATCATTTCTGAAGACCACAGTGGACCCAAATGATGTTCAGAGCCAAACCTGTGATAGTACTGATGATGCTGATATTTCTCTCACTTTGTTGTCACCGTCTATGAAGTATGGTGATGTTGTTGAAGATAAAAATAATTGTTGA 1311 0.3822 MSSKYDFVKDLNPTKEEWRIKVRVVRYWKVPSFNQKDFDDNVDMVLVDERLIVSFVVVVVVVACFHFIGWKDPCYGQGPTRHEYHLSFNLRTDVKSIVDAKIPERGFDFAEFDVIEKESSDSPYLIGDGIGVLCYALSIKILYIGRKAETHVICCVDVIGLLSGIGEVREHVISGRNTKMVVVELDNLRGQKLECTLRESYVDEVQTFLAKNQSAQNVIILQLARIKGFRGFPRKFLTDIKNCIDATTCITYGIVKSIESKYNWWYKSCKECPYSVCEDFEKWYCKNCQKHWNEYTPKFSVQVRVVDNTDSASFVLFDRDCLSLLGVSAAELREQHFKRGADLEHYPEELNVLKDRSMLFKVNVKISNLNSYSEPKYHVAKVCISESIITSFLKTTVDPNDVQSQTCDSTDDADISLTLLSPSMKYGDVVEDKNNC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00010 436 CDD RPA1_DBD_B_like 157 233 - -
Gabi2483g00010 436 CDD RPA1_DBD_C 249 382 IPR047192 -
Gabi2483g00010 436 Gene3D - 227 388 IPR012340 -
Gabi2483g00010 436 SUPERFAMILY Nucleic acid-binding proteins 233 382 IPR012340 -
Gabi2483g00010 436 Pfam Replication factor-A C terminal domain 251 382 IPR013955 -
Gabi2483g00010 436 PANTHER OS03G0429900 PROTEIN 255 406 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2483g00010 436 Gene3D - 5 96 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00010 Gabi-Chr2483 83173 85492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2483g00010 251 383 Core DNA Replication Machinery Family AT5G61000 25.373 1.93e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00010 - - adu:107490971 183.341