Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00008 ATGCGTGTTCTTCTTGTTGATAACGACCGAGAAAGCATTTTCAGTTTAGAGACTATGCTCCGAAGTTGTCAATACCATGTAACCACGGCTACAGATGCAACGACAGTACTGAAGATGTTGAGAGAAAACAAGTTTGACCTTGTAATCAGTGAACTTCACATGCCTGAAATTGATGGACTTAAGCTGCTTAAGCTCATGCAAGCTTGGATGGACATACCTGTTATATTGTTTTCCAATGGTCATGACAGCAAGTTGGCGATGGAAGCAGTTGCTCTGGGAGCATCTGATTATTTGGAGAAACCAATTAGAATTAAAGAGCTCAAGAATATATGGCAGCATGTAGTGAAAAAAAAGATTAATTCTAAGAAGCAGGAAGAAAAGATTAATTCTAAGAAGCAGGCAGAAAATGAGGATGACGACTATAAAGAGCCTGGTCATAACAAGGAGCACCAAGCAATCCAAAGGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAGAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTACCTAAACAAGTTCTTCAAGTGATGAACGTTGAGGAGCTTACTAGGGACCATGTGGCCAGCCATCTTCAGAAGTATAGAAAAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCGTCTTCACCTGGTGGGATGATTAGAAGATTGGACACTCCTGCTGTTGTGCCAGAGTTGCCTTCTTCTGCAACTCTTCAATTGGATCATGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTCCAATCAGCCTTAGTTTATGATAATCAAAATAGTTTACTGGGATTGCCAATGTTTGGGGAGCTTGACCAACTGCTTTGGAATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCTCCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAAGGAATCTGAGTAGTGTTACAAATGCTCCTGGGCAAACGAGTAATAATGTGCCTTTTCAGAGGTTGGATGACCAAAGACAGGATGGCAGTCATCCTTAA 1401 0.4218 MRVLLVDNDRESIFSLETMLRSCQYHVTTATDATTVLKMLRENKFDLVISELHMPEIDGLKLLKLMQAWMDIPVILFSNGHDSKLAMEAVALGASDYLEKPIRIKELKNIWQHVVKKKINSKKQEEKINSKKQAENEDDDYKEPGHNKEHQAIQRKHRVIWTEELHQSFLAAVNQLGGVDKAVPKQVLQVMNVEELTRDHVASHLQKYRKSLNKISSKPTQQVNNVSAFRSSSPGGMIRRLDTPAVVPELPSSATLQLDHAQNLNNSTNDQRNFQSALVYDNQNSLLGLPMFGELDQLLWNDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGRNLSSVTNAPGQTSNNVPFQRLDDQRQDGSHP 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00008 466 FunFam Two-component response regulator 152 216 - -
Gabi2483g00008 466 MobiDBLite consensus disorder prediction 122 153 - -
Gabi2483g00008 466 Gene3D - 152 216 - -
Gabi2483g00008 466 ProSiteProfiles Response regulatory domain profile. 2 115 IPR001789 GO:0000160
Gabi2483g00008 466 MobiDBLite consensus disorder prediction 215 232 - -
Gabi2483g00008 466 MobiDBLite consensus disorder prediction 436 457 - -
Gabi2483g00008 466 Gene3D - 1 150 - -
Gabi2483g00008 466 Pfam Response regulator receiver domain 3 109 IPR001789 GO:0000160
Gabi2483g00008 466 SUPERFAMILY CheY-like 1 123 IPR011006 -
Gabi2483g00008 466 Pfam Myb-like DNA-binding domain 161 209 IPR001005 -
Gabi2483g00008 466 CDD REC_typeB_ARR-like 3 115 - -
Gabi2483g00008 466 SUPERFAMILY Homeodomain-like 154 214 IPR009057 -
Gabi2483g00008 466 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 213 IPR017930 -
Gabi2483g00008 466 MobiDBLite consensus disorder prediction 215 234 - -
Gabi2483g00008 466 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 253 IPR045279 GO:0009736
Gabi2483g00008 466 SMART REC_2 1 111 IPR001789 GO:0000160
Gabi2483g00008 466 MobiDBLite consensus disorder prediction 436 466 - -
Gabi2483g00008 466 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 210 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00008 Gabi-Chr2483 53749 62742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2483g00008 1 227 Response Regulator Gene Family AT4G31920 49.580 1.49e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi2483g00008 Response_reg 5.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00008 - K14491 gmx:100793913 272.707