Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2483g00007 ATGTTGAGAGAAAACAAGTTTGACCTTGTAATCAGTGAACTTCACATGCCTGAAATTGATGGACTTAAGCTGCTTAAGCTCATGCAAGCTTGGATGGACATACCTGTTATATTGTTTTCCAATGGTCATGACAGCAAGTTGGCGATGGAAGCAGTTGCTCTGGGAGCATCTGATTATTTGGAGAAACCAATTAGAATTAAAGAGCTCAAGAATATATGGCAGCATGTAGTGAAAAAAAAGATTAATTCTAAGAAGCAGGAAGAAAAGATTAATTCTAAGAAGCAGGCAGAAAATGAGGATGACGACTATAAAGAGCCTGGTCATAACAAGGAGCACCAAGCAATCCAAAGGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAGAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTACCTAAACAAGTTCTTCAAGTGATGAACGTTGAGGAGCTTACTAGGGACCATGTGGCCAGCCATCTTCAGAAGTATAGAAAAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCGTCTTCACCTGGTGGGATGATTAGAAGATTGGACACTCCTGCTGTTGTGCCAGAGTTGCCTTCTTCTGCAACTCTTCAATTGGATCATGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTCCAATCAGCCTTAGTTTATGATAATCAAAATAGTTTACTGGGATTGCCAATGTTTGGGGAGCTTGACCAACTGCTTTGGAATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCTCCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTGCACCCTTGCAAGGAAGGAATCTGAGTAGTGTTACAAATGCTCCTGGGCAAACGAGTAATAATGTGCCTTTTCAGAGGTTGGATGACCAAAGACAGGATGGCAGTCATCCTTAA 1287 0.4211 MLRENKFDLVISELHMPEIDGLKLLKLMQAWMDIPVILFSNGHDSKLAMEAVALGASDYLEKPIRIKELKNIWQHVVKKKINSKKQEEKINSKKQAENEDDDYKEPGHNKEHQAIQRKHRVIWTEELHQSFLAAVNQLGGVDKAVPKQVLQVMNVEELTRDHVASHLQKYRKSLNKISSKPTQQVNNVSAFRSSSPGGMIRRLDTPAVVPELPSSATLQLDHAQNLNNSTNDQRNFQSALVYDNQNSLLGLPMFGELDQLLWNDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFAPLQGRNLSSVTNAPGQTSNNVPFQRLDDQRQDGSHP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2483g00007 428 FunFam Two-component response regulator 114 178 - -
Gabi2483g00007 428 MobiDBLite consensus disorder prediction 177 196 - -
Gabi2483g00007 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 217 IPR045279 GO:0009736
Gabi2483g00007 428 MobiDBLite consensus disorder prediction 398 428 - -
Gabi2483g00007 428 SUPERFAMILY Homeodomain-like 116 176 IPR009057 -
Gabi2483g00007 428 MobiDBLite consensus disorder prediction 177 194 - -
Gabi2483g00007 428 Pfam Response regulator receiver domain 2 71 IPR001789 GO:0000160
Gabi2483g00007 428 ProSiteProfiles Response regulatory domain profile. 1 77 IPR001789 GO:0000160
Gabi2483g00007 428 Gene3D - 1 111 - -
Gabi2483g00007 428 Pfam Myb-like DNA-binding domain 123 171 IPR001005 -
Gabi2483g00007 428 Gene3D - 114 178 - -
Gabi2483g00007 428 MobiDBLite consensus disorder prediction 84 115 - -
Gabi2483g00007 428 MobiDBLite consensus disorder prediction 398 419 - -
Gabi2483g00007 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 175 IPR017930 -
Gabi2483g00007 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 172 IPR006447 GO:0003677
Gabi2483g00007 428 SUPERFAMILY CheY-like 1 85 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2483g00007 Gabi-Chr2483 53749 62742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2483g00007 1 189 Response Regulator Gene Family AT4G31920 49.000 2.18e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi2483g00007 Response_reg 1.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2483g00007 - K14491 gmx:100793913 236.498