Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2480g00014 ATGGAAATGGGTACTGTAGTGTTGTTGTGGGTTTTCTTGGGGATTTTGACTACAGTTTTCTGCCCTTCTTCTCTTGCTCTCACTCAGGATGGTCTGACGTTGTTGGAAATCAAAAGCTCTTTGAATGACACTAAGAATGTTCTGAGCAACTGGCAAGAGTATGATGAGTCTCCTTGTGCATGGGTTGGGATCTCTTGTCATCCTGGTGAACAAAAAGTTCGCTCAATAAATCTGCCATACATGCAACTTGGAGGAATTATATCTCCTAGCATTGGTAAACTCAGTAGATTACAGAGACTGGCACTTCATCAGAATGGCTTGCATGGAATCATTCCTAATGAAATTACCAATTGTTCTGAGCTAAGAGCACTGTACCTGAGGGCTAATTATTTCCAAGGAGGCATACCAGCGGATATTGGAAACCTTTCATTTTTAAATATACTGGATTTATCAAGCAACTCTTTAAAAGGTGCTATACCTTCCTCCATTGGCCGTCTCTCGCATTTGCAAGTTCTGAACTTGTCTACCAATTTCTTCTCTGGTGAAATCCCCGACATTGGAGTATTAAGCACCTTTGAGAAGAACTCGTTTATTGGCAATTTAGATCTTTGCGGGCGGCAAGTCCAAAAGCCATGTCGGACATCACTTGGTTTCCCTGTGGTGCTACCGCATGCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGATCTTCACATTACATGAAGGGGGTAATAATTGGTGCAATGGCAACTCTGGCCCTTGCACTTGTTGTAATCCTTTCATTCCTCTGGATTCGTTTGCTATCAAAGAAGGAAAGAGTTGCTAGGAAATACACAGAAGTCAAGAAACAAGTAGATCCAGAAGCAAGCACAAAACTTATTACCTTCCATGGTGATCTACCATACACATCTTCTGAGATCATAGAAAAGCTAGAGTCTCTCGATGAAGAGGATGTAGTAGGATCAGGAGGATTTGGCACTGTTTATAGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGACCGCAGTCGTGAAGGGTCTGATCAAGTTTTTGAAAGGGAACTAGAGATTTTGGGGAGCATCAAGCACATAAATTTAGTAAACCTGCGTGGTTACTGCAGGCTCCCTTCTTCAAGGCTCCTTATCTATGATTATTTGGCCATGGGAAGCATAGATGATCTCTTGCATGAAAATAGTGATCGACAATTACTGAATTGGACTGATCGTCTAAAGATAGCCCTTGGTTCTGCCCGGGGTTTAGCATACTTGCACCATGAATGCTGCCCAAAAATTGTGCATCGTGACATAAAATCAAGCAACATCCTCCTTGATGAAAACATGGAGCCTCATATCTCTGATTTTGGTCTTGCAAAGCTTTTAGTTGATGAAGATGCCCATGTTACGACAGTGGTTGCTGGCACTTTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGGCAGATGTATATAGCTTTGGAGTTCTATTGCTGGAACTAATAACTGGAAAGAGGCCAACAGATCCTTCCTTTGTAAAGAGAGGTTTAAATGTTGTTGGTTGGATGAACACATTACTAAGTGAAAACAGATTGGAAGACGTGGTAGATAATAGATGCACAGATGCAGATGCAGGAACTCTTGAAGTAATTCTAGAGCTAGCAGCAAGATGCACAGATGCAAATGCAGATGATCGTCCATCAATGAACGAGGTATTACAATTGTTGGAACAAGAAGTTATGTCCCCATGCCCAAGTGAGTTTTATGAGTCTCATTCGGATCACTGTTAA 1812 0.4189 MEMGTVVLLWVFLGILTTVFCPSSLALTQDGLTLLEIKSSLNDTKNVLSNWQEYDESPCAWVGISCHPGEQKVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPNEITNCSELRALYLRANYFQGGIPADIGNLSFLNILDLSSNSLKGAIPSSIGRLSHLQVLNLSTNFFSGEIPDIGVLSTFEKNSFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPTKRSSHYMKGVIIGAMATLALALVVILSFLWIRLLSKKERVARKYTEVKKQVDPEASTKLITFHGDLPYTSSEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYLAMGSIDDLLHENSDRQLLNWTDRLKIALGSARGLAYLHHECCPKIVHRDIKSSNILLDENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKADVYSFGVLLLELITGKRPTDPSFVKRGLNVVGWMNTLLSENRLEDVVDNRCTDADAGTLEVILELAARCTDANADDRPSMNEVLQLLEQEVMSPCPSEFYESHSDHC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2480g00014 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gabi2480g00014 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 189 - -
Gabi2480g00014 603 ProSiteProfiles Protein kinase domain profile. 314 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2480g00014 603 SUPERFAMILY L domain-like 28 205 - -
Gabi2480g00014 603 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 390 595 - -
Gabi2480g00014 603 SMART serkin_6 314 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2480g00014 603 Pfam Protein kinase domain 316 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2480g00014 603 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Gabi2480g00014 603 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Gabi2480g00014 603 Gene3D Ribonuclease Inhibitor 28 214 IPR032675 -
Gabi2480g00014 603 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Gabi2480g00014 603 Gene3D Phosphorylase Kinase; domain 1 274 389 - -
Gabi2480g00014 603 Gene3D Transferase(Phosphotransferase) domain 1 390 593 - -
Gabi2480g00014 603 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 75 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2480g00014 Gabi-Chr2480 310588 314779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2480g00014 10 592 Receptor kinase-like Gene Family AT2G35620 48.459 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Gabi2480g00014 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2480g00014 - - gmx:100803920 1090.87