Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2480g00011 ATGGCTGAATCTCTTCTCTTCAGCGTCGCAGAGTCACTCATAGAGAAGCTTGCTTCTCCTGCTGTTCAAAAAGCTTCTTCGGCGCTGGGTGTGTACGATGATATGCGAGAGCTCAGAGAAACAGTGTCTTTCATCAAAGCTGTGCTGTTGGATGCAGAGCAAAAGCAGCAGCAGAACAATGAGTTGCGTGTGTGGCTGAGACAGGTTAAGCGTGTTTTCTCTGAGGCCGAAGACATAATCGATGATGTTGAGTGCGAAGCCTTACGTAAGCATGTTGTCAACACTTACGGTAGCATCATAAGCAAGGTACTCCATTTCTTCTCAACTTCAAATCCTCTTGTTTATTGTCTTATAATGGTGCCTCAAATAAAAGATGTTAAAAGGAGGTTAGAAAAGGTTGCTGCTGATAGGCATACGTTTGGCCTTCAAACCATTGAGAATGATACACGTGTTGTGCATAGGAGGGAAATGACTCACTCACATGTTGATGCTTCGGATGTGATAGGAAGGGAACATGATAAAGATAAAATTTTAGAGCTTTTGTTACAGCATGATGGTGATGATAAAAGTCTCTCTGTTATCCCCATCGTGGGAATGGGAGGCTTGGGGAAGACTACACTTGCAAAGTTGGTGTTTAATGATGAGAGTATAGATAAGTCTTTCCCATTGAAGATGTGGGTGTGTGTCTCTGATGATTTTGAACTTGAGGATATGCTTCGTAAAATCCTCAAATCTGCTACTGATACTAGTAATTCGACTCCCTCCCCAGCTCACCAGGAGAGCTTTAAAAACTCTAATATGGAGCAACTACAACGTCTTCTAAGAAGTAAACTTGCTGGTAAAAAGTTTTTGCTTGTCTTGGATGACGTATGGAACGAGGATCGTGTTAAATGGGTCGAGTTGAAGAATTTACTACAAGGAGGTGCTGAAGGAAGTAAAATCTTGGTGACTACACGTAGCCACTCAATTGCTACCATGATGTCCACTGGTTCATCTTACGATTTAAAAGGTCTTTCTGAAGAGGATTCCTTGTCTGTATTTGTCAAATGGGCTTTTAAAGAAGGAGAAGAGAGAAGATATCCTGAATTGTTGCAGATTGGGAAAGACATTGTGAAAAAATGTGGTGGGCTTCCATTGGCTGTGAGAACATTAGGGAGTTCGCTATTCTTGAAAGTTGATATGAAAGACTGGGAGTCTGTTAGAGACAATGAGATTTGGAATTTACCACAAAAAGATGGTGACATTCTGCCTGCCTTAAAATTAAGTTATGACCAGCTGCCTTCATATTTAAAACGATGTTTTGCTTGCTTCTCCCTTTTTCCAAAGGACTTTAATTTCAATGATGTTCATGTTCCTTGGCTTTGGGAGGCACATGGTTTTCTTCCATCGCCAAACAAAAGCAAAACACTGGATGATGTAGGCAATGAATTTTTGCGTGAGCTGCAATCAAGATCTTTCCTTCAAGATTTTGTTGACCATGGTACTACTTGCAAATTTAAATTACACGATTTGGTGCATGATCTTGCAATTTATGTTGCAAAAGATGAGTTTCAAGTCATAAATTCTTGTAGTGAGAATGTATTTGAGAATGTCCAGCATTTGTCATTCACCAAAAATGATTTGCATGGTCAAACTTCCATTCCAAGAGGTGTGAGAACAGTATGTTTTCCGGTGGGAGCCAACAACGAAGCTTTCTTGAATACATTGGTGTCAAGGTCCAAATACTTGCGGTTTTTGAAATTAGGTAAGTCCGAGTATGAGACCTTTCCCTGCTCCATTGGTAAGTTGAAACATTTAAGATATCTCTCTCTTTCGGATAATCAAAAGCTGAAGAGTCTCCCTAATTCATTGAGCAGGCTCCAACATTTGCGATTTTTGCAGCTCTATGCATGCACGGAGCTACAAACATTGCCCAAAGGAATAGGAAACTTGATTAGCCTTCGAGTTTTGAGTTTAAGCACAAAGCAATCTGATTTTCCGGACAAAGATATTGCAAAATTGACTTCTCTTGAAACATTAAATTTAACTTGTTGTGACAATTTGGAGTCATTGTTCGAAGGAATGCAACTTCCTAATCTTAAATCGTTGGCTATTGATTCTTGTGGGAGTCTAAAGTCTTTGCCACTTCATGCTACTCCAAACTTACAGAGTTTGTATATTATAAAGTGCGATAAGTTGGAATTGTCAGAGGGCCTTGACAACCAAATCCCTGAGTTAAGGTTAAAGTTTCTAGTCTTTCGTAATTTGCCACAGTTGGTGACTTGTCCTCAATGGGTGCAGAGATCTACGAGCACATTACATTCCTTGATGATTACACGTTGTGGCAATCTTGAGGAGCTTCCCGAGCAGCTGTCAGCTTCGAGTTATCTCAAAACACTTGTAATTATCAATTGTCCAAAGTTGCTTTCACTCCCAGATGATATTCATCACCTCACCAACCTTGAAGTTTTAGTAATTGGAGAATGCCCTGAACTATACAGAAGATACCAGCCAGAAGTAGGACGGGATTGGCCCAAAATATCTCACATCAAACGAGTCGTTATTCCTGAACCATAA 2556 0.4022 MAESLLFSVAESLIEKLASPAVQKASSALGVYDDMRELRETVSFIKAVLLDAEQKQQQNNELRVWLRQVKRVFSEAEDIIDDVECEALRKHVVNTYGSIISKVLHFFSTSNPLVYCLIMVPQIKDVKRRLEKVAADRHTFGLQTIENDTRVVHRREMTHSHVDASDVIGREHDKDKILELLLQHDGDDKSLSVIPIVGMGGLGKTTLAKLVFNDESIDKSFPLKMWVCVSDDFELEDMLRKILKSATDTSNSTPSPAHQESFKNSNMEQLQRLLRSKLAGKKFLLVLDDVWNEDRVKWVELKNLLQGGAEGSKILVTTRSHSIATMMSTGSSYDLKGLSEEDSLSVFVKWAFKEGEERRYPELLQIGKDIVKKCGGLPLAVRTLGSSLFLKVDMKDWESVRDNEIWNLPQKDGDILPALKLSYDQLPSYLKRCFACFSLFPKDFNFNDVHVPWLWEAHGFLPSPNKSKTLDDVGNEFLRELQSRSFLQDFVDHGTTCKFKLHDLVHDLAIYVAKDEFQVINSCSENVFENVQHLSFTKNDLHGQTSIPRGVRTVCFPVGANNEAFLNTLVSRSKYLRFLKLGKSEYETFPCSIGKLKHLRYLSLSDNQKLKSLPNSLSRLQHLRFLQLYACTELQTLPKGIGNLISLRVLSLSTKQSDFPDKDIAKLTSLETLNLTCCDNLESLFEGMQLPNLKSLAIDSCGSLKSLPLHATPNLQSLYIIKCDKLELSEGLDNQIPELRLKFLVFRNLPQLVTCPQWVQRSTSTLHSLMITRCGNLEELPEQLSASSYLKTLVIINCPKLLSLPDDIHHLTNLEVLVIGECPELYRRYQPEVGRDWPKISHIKRVVIPEP 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2480g00011 851 Gene3D - 337 427 IPR042197 -
Gabi2480g00011 851 Gene3D - 429 510 IPR036388 -
Gabi2480g00011 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 436 IPR027417 -
Gabi2480g00011 851 Pfam Rx N-terminal domain 10 91 IPR041118 -
Gabi2480g00011 851 PANTHER DISEASE RESISTANCE PROTEIN RP 49 817 IPR044974 GO:0006952
Gabi2480g00011 851 ProSiteProfiles Leucine-rich repeat profile. 598 621 IPR001611 GO:0005515
Gabi2480g00011 851 FunFam Probable disease resistance protein At1g61300 149 331 - -
Gabi2480g00011 851 PRINTS Disease resistance protein signature 374 388 - -
Gabi2480g00011 851 PRINTS Disease resistance protein signature 193 208 - -
Gabi2480g00011 851 PRINTS Disease resistance protein signature 277 291 - -
Gabi2480g00011 851 PRINTS Disease resistance protein signature 665 681 - -
Gabi2480g00011 851 SUPERFAMILY L domain-like 500 822 - -
Gabi2480g00011 851 Gene3D Ribonuclease Inhibitor 511 756 IPR032675 -
Gabi2480g00011 851 Gene3D - 149 332 IPR027417 -
Gabi2480g00011 851 Coils Coil 35 55 - -
Gabi2480g00011 851 Gene3D - 10 114 - -
Gabi2480g00011 851 CDD RX-CC_like 8 134 IPR038005 -
Gabi2480g00011 851 Gene3D Ribonuclease Inhibitor 757 842 IPR032675 -
Gabi2480g00011 851 Coils Coil 66 86 - -
Gabi2480g00011 851 Pfam NB-ARC domain 170 423 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2480g00011 Gabi-Chr2480 286945 289500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2480g00011 176 825 WRKY Transcription Factor Family AT5G45050 24.029 3.77e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2480g00011 - - gmx:100780033 1080.86