Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2480g00010 ATGGCCGAATCCCTTCTCTTCAGCGTCGCAGATTCACTCATTGGGAAGATTACTTCTTTGACTGTTAAAGAAGCTTCTTCGGTGTTGAGTGTGAAGGCCGATCTGAATGGACTCAAAGAAACTGTGACATTCATCAAAGCTGTGCTGTTGGATGCAGAGCAAAAGCAGCAACAGAACAATGAGTTGCGTGTGTGGCTTAGACAGATTAAGCGTGTTTTCTTTGATGCCGAAGACATAATCGATGATTTTGAGTGCGAAGCCTTACGTAAGCATGTTGTCAACACTTACGGTAGCAACTCAAGGAAGGTACGCCGTTTCTTCTCTACTTCAAATCCTCTTGTTTATCATATTAGAATGGCGCATCAGATCAAAGATATCAAACAGAGATTAGATAACGTAGCCGCTGATAGGCAAAAGTTTGGCCTTCAAACCATTGAGAATGATACACGTGTTGTGCATAGGAGGGAAATGACTCACTCCCATGTTGATGCTTCAGATGTGATAGGAAGGGAACATGATAAAGATAAAATTTTAGAGCTTTTGTTACAATACGATGGTGATGATATAAGTCTATCTGTTATCCCCATCGTGGGAATTGGAGGTTTGGGAAAGACTACACTTGCAAAGTTGGTGTTTAATGATGAGAGTATAGATAAGTCTTTCCCATTGAAGATGTGGGTGTGTGTCTCTGATGATTTTGAACTTGAGGGTTTGCTTCGTAAAATCCTCAAATCTGCTACTAATAGTAGTGATTCTGCTCCCGTCCAAGCTCACCGGGAGAGCTTTAAAAACTCTGATATGGAGCAACTACAACGTCTTCTAAGAAGTAACCTTGCAGGTAAAAAGTTTTTGCTTGTCTTGGATGACGTATGGAACGAGGATCGTGTTAAATGGGTCGAGTTGAAGAATTTACTACAAGGAGGTGCTGAAGGAAGTAAAATCTTGGTGACTACACGTAGCCACTCAATTGCTACCATGATGTCCACTGGTTCATCTTACGATCTACAAGTTCTTTCTGAAGATGATTCCTTGTCCCTATTTGTCAAATGGGCTTTTAAGGAAGGAGAAGAGAGAAGATATCCTGAATTGTTGCAGATTGGGATAGACATTGTGAAAAAATGCGATGGGCTTCCATTGGCCATGAGAACAGTTGGAAGTTCACTATTCTTGAAAGTTGATTTGAAAGACTGGGAGTCTGTTAGAGACAATGAGATTTGGAATTTAACACAAAAAGAAGGTGACATTCTTCCTGCTCTACAATTAACTTATGATCAACTGCCTTCATATTTAAAATCATGTTTTGCCTGCTTCTCCCTTTTTCCAAAAGACTTTGAGTTCAATAGTTTTGATGTTATTGCACTTTGGGTGGCACTCAGTTTTCTTCCAACACAAAACAAAAACAATTTTTTTGAAGAAGTTGGCAATCAATTTTTGCATGAGCTGCAGTCAAGATCTTTTCTTCAAGATTTTATTGACCATGGTACTGCTTGTGAATTTAAATTACACGATTTGGTGCATGATCTTGCAACGTATGTCGCAAACGAAGAGTTTCAACTGTTAAATTCTAGCAATCAGAACATATGTAAGCATGCCCAGCATTTGTCATTTTTTAAAAATGATTTGCTTGACCATTCTTCCATTCCAAGAGGTCTGAGAACCATATTTTTTCCTAATGGAGCCAACAATGAAGCTTTCTTTAATACATTGGTGTCAAGGTGCAATTACTTGCGGGTTTTGAATTTAATTGAGTCTGAATATGAGAGTTTGCCCAGCTCCATTGGTAAGTTGAAGCATATAAGATTTCTCTGTCTTTACTCTAATGAAAAACTTAAGCGACTCCCTAGTTCAGTCTGCAAGCTCCAAAATCTACTAGTTTTGGATCTCAGAGGATGCACTAATTTACAAACATTGCCCAAAGGAATAGGAAACATGATTAGTCTTCGAGACCTGGGTATAAGCACAAAGCAATCTGATTTTCCGGACAAAGAAGTTGCAAAATTGACTTCTCTAGAATTATTAAGTTTAAGCAATTGTGACAATTTGGTATCATTCCTCAAAGCGGTGCAACTGCCTAATCTTAAAGGGTTGTTTATTGATTCTTGTGACAATCTAAAGTCTTTGCCACTCCATGCTACTCCAAACCTAGAGACTTTGCTTATTAGGAACTGCGACAAGTTGGAATTGTCAAAGGGCCTTGACAACCAAATCCTTGAGTTAAGGTTAAAGTTATTAGAACTTAGTTATTTGCCACAGCTGGTGACTTGGCCTCAATGGCTGCAAAGATCTGGAAGCCCATTACATTCCTTGTTGATTGATAACTGTGACAATCTTAAGGAGCTTCCCAAGTGGCTGTCAACTTTGATTCATCTCAAAACACTTATGATTATAAAGTGTCCAAAATTGCTTTCACTCCCTGAAGACATGCATTGTTTCACCTACCTTGAATACTTATGTATTGAAGATTGTCCAAATCTATGTAGAAGGTACCAGCCAGAAGTTGGATGGGATTGGCCCAAAATATCGCACATCAAACGAGTCTACATTGGTGAACCAGAATCGGAATAG 2565 0.3899 MAESLLFSVADSLIGKITSLTVKEASSVLSVKADLNGLKETVTFIKAVLLDAEQKQQQNNELRVWLRQIKRVFFDAEDIIDDFECEALRKHVVNTYGSNSRKVRRFFSTSNPLVYHIRMAHQIKDIKQRLDNVAADRQKFGLQTIENDTRVVHRREMTHSHVDASDVIGREHDKDKILELLLQYDGDDISLSVIPIVGIGGLGKTTLAKLVFNDESIDKSFPLKMWVCVSDDFELEGLLRKILKSATNSSDSAPVQAHRESFKNSDMEQLQRLLRSNLAGKKFLLVLDDVWNEDRVKWVELKNLLQGGAEGSKILVTTRSHSIATMMSTGSSYDLQVLSEDDSLSLFVKWAFKEGEERRYPELLQIGIDIVKKCDGLPLAMRTVGSSLFLKVDLKDWESVRDNEIWNLTQKEGDILPALQLTYDQLPSYLKSCFACFSLFPKDFEFNSFDVIALWVALSFLPTQNKNNFFEEVGNQFLHELQSRSFLQDFIDHGTACEFKLHDLVHDLATYVANEEFQLLNSSNQNICKHAQHLSFFKNDLLDHSSIPRGLRTIFFPNGANNEAFFNTLVSRCNYLRVLNLIESEYESLPSSIGKLKHIRFLCLYSNEKLKRLPSSVCKLQNLLVLDLRGCTNLQTLPKGIGNMISLRDLGISTKQSDFPDKEVAKLTSLELLSLSNCDNLVSFLKAVQLPNLKGLFIDSCDNLKSLPLHATPNLETLLIRNCDKLELSKGLDNQILELRLKLLELSYLPQLVTWPQWLQRSGSPLHSLLIDNCDNLKELPKWLSTLIHLKTLMIIKCPKLLSLPEDMHCFTYLEYLCIEDCPNLCRRYQPEVGWDWPKISHIKRVYIGEPESE 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2480g00010 854 SUPERFAMILY L domain-like 496 840 - -
Gabi2480g00010 854 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gabi2480g00010 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 436 IPR027417 -
Gabi2480g00010 854 FunFam Probable disease resistance protein At1g61300 149 331 - -
Gabi2480g00010 854 Gene3D - 417 506 IPR036388 -
Gabi2480g00010 854 Gene3D Ribonuclease Inhibitor 507 688 IPR032675 -
Gabi2480g00010 854 PRINTS Disease resistance protein signature 374 388 - -
Gabi2480g00010 854 PRINTS Disease resistance protein signature 193 208 - -
Gabi2480g00010 854 PRINTS Disease resistance protein signature 665 681 - -
Gabi2480g00010 854 PRINTS Disease resistance protein signature 277 291 - -
Gabi2480g00010 854 PANTHER DISEASE RESISTANCE PROTEIN RP 48 819 IPR044974 GO:0006952
Gabi2480g00010 854 CDD RX-CC_like 8 134 IPR038005 -
Gabi2480g00010 854 Gene3D - 10 124 - -
Gabi2480g00010 854 Gene3D Ribonuclease Inhibitor 689 832 IPR032675 -
Gabi2480g00010 854 Gene3D - 148 333 IPR027417 -
Gabi2480g00010 854 Pfam NB-ARC domain 170 403 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2480g00010 Gabi-Chr2480 274799 277363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2480g00010 176 804 WRKY Transcription Factor Family AT5G45050 23.417 4.31e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2480g00010 - - gmx:100780033 1035.4