Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi247g00012 ATGGCTAGGAAACACAGAAAACTCTTTCCTGCAGAAACTACCACAAACCAAACCCAAGACTGTTATGGTTTTTGTGACCCAGCATGCCCTTACAACTGCTACTCTAACCCAAACTACTACTTTTATCCACCACCACCATCTATTTCAGCTTCTGAACACTCAAGCCAAGTTAACCATATCTCCTCCTACTTAATCATCCTCGTTTCTATATTCACAGTCATATTTGTTGTTGTTGGTTTCTATGTGATCAAAATAAAGTGCTATGCTGACTGGTGTGGCTGGAGAGTCAACGGATCAGTTCCCTCTCAGCAATCAGAAAACTCTGATGAGCTTCTCAATGAGAACCAAGTGGATCACCCTGTGTGGCTCATCTCCACAGTTGGTTTACAACAATCAATCATAAATTCCATTACAGTGTGTAAGTACAAAAAGGATGAGGGGTTGATTGAAGGAACCGAGTGTTCTGTGTGTTTGAACGAGTTCAGAGAAGATGAAACCTTAAGGCTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATTGACACTTGGTTGAGATCTCATACCAATTGTCCTCTTTGCCGAGCCGGTATTGTCTCTAACAATGTTATTCCTGAAGCAGCCATGTCAAATTTGGCTTCAATGGAGCAAGAAAATACCAACTTGGGAAGAAATCAAGAGACCCTGATAGAGAATTCAAGGAATGATACTGGATTAAGCAACAATATGGTTATCACTGGAGCCTCTGAAAACATAGCTGGAACTGGGGAAGCAAGTGAAGAAGTAGAATTCACTGATGAATCAAATTCCAAGGAGCGAGTGAATGTTGATAGATGTCATGTTCAAGAGGTGCTCAATGATCAAAATCAGAGTCCTGTGGTTCAAAATGATGAGATACAAACAGAGGTGAAGTCTGTTTCACCTGAAAGCCACCACGTTGTTGGTCATACACAGGATTACACTGAGTTTCACACGGTTGATGGTTATTACTCAAAAATGTGGAAAACAATGCGTCGTGCCTCAATTGAAGAGAGTTTACACATAAGCCCGGTCTCTATGAAAAGGTCATTCTCCTGCAATGGAAGGATTCTATGTACGAGAGGTTACATGAGTCTAAACTCAACTTATCCCTATTAG 1140 0.4123 MARKHRKLFPAETTTNQTQDCYGFCDPACPYNCYSNPNYYFYPPPPSISASEHSSQVNHISSYLIILVSIFTVIFVVVGFYVIKIKCYADWCGWRVNGSVPSQQSENSDELLNENQVDHPVWLISTVGLQQSIINSITVCKYKKDEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVIPEAAMSNLASMEQENTNLGRNQETLIENSRNDTGLSNNMVITGASENIAGTGEASEEVEFTDESNSKERVNVDRCHVQEVLNDQNQSPVVQNDEIQTEVKSVSPESHHVVGHTQDYTEFHTVDGYYSKMWKTMRRASIEESLHISPVSMKRSFSCNGRILCTRGYMSLNSTYPY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi247g00012 379 PANTHER RING-H2 FINGER PROTEIN ATL16 49 311 IPR044600 GO:0016567|GO:0016740
Gabi247g00012 379 SUPERFAMILY RING/U-box 144 202 - -
Gabi247g00012 379 CDD RING-H2_EL5-like 153 196 - -
Gabi247g00012 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Gabi247g00012 379 SMART ring_2 154 195 IPR001841 -
Gabi247g00012 379 FunFam RING-H2 finger protein ATL54 129 202 - -
Gabi247g00012 379 Pfam Ring finger domain 153 196 IPR001841 -
Gabi247g00012 379 Coils Coil 213 233 - -
Gabi247g00012 379 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi247g00012 Gabi-Chr247 145849 147063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi247g00012 1 200 C3H Transcription Factor Family AT1G72220 50.000 2.95e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi247g00012 - - aprc:113847030 511.146