Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi247g00011 ATGGCCCTTGAAGCTGTGGTTTTCCCACAAGATCCATTTTCTTATGGTTGCAAAGATTACTTGTACTCCTTATTAGGAGGAGGAAGTGCTGCTAGTGACTCAACCTGGAACAACGACTACGGTTTCCAAGCAACAGAAGAGAAAGCCATTCTTGGAATTATCAACAATAACATAGAGCACAATCTCCATGCAAATTGGGATTCTTCTTCTTCCTCGGTGTTGCGAAATGTCAAGGACCAATGGGATTCACACTCTTCCTCCCCAGAGGCTTGCACCGTTGATCAATCCATGCCCCGAGCTGCTTCCCCTCTTCCTCCTTCCTCCACTGTGACCACCGCCGCCGCCGCTGCCGCCACAAGTCGGCGCAAACGACGTCGCACCAAAAGCGCAAAGAACATGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATCGAAGGAAACAGATGAATGAGTACCTCGCTGTGCTCAGATCTTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCTATTATTGGAGGCGCAATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTACAGTGCATGAAGGGACAAAAGAAAACAAAGGAACAAGTTCAGGAGAATTGCTCCAGTGCCTCCTCAGTCTCACCCCTTGCTGAGTTCTTCATGTTCCCTCAGTACTCAACTCGTGCAACTCAGAGTAGCACATCCTCGTACATGGAACAGAGCCAGAACAAGAATCAATCATGGGCCGTAGCAGATATAGAAGTGACCTTGGTGGATAGCCATGCCAACATAAAGATACTCTCAAAGAAACAACCTGGGCAGATTATGAAAATGGTTGTTGGGCTACAAAGTCTTGGACTCGGCATTCTCCACCTTAATGTTACCACTGTGGACGATATGGTCCTTACCTCAGTTAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCAGCTGTGAATCAACTATCACGCACTGTCCAGGGTGAAGCTGCTTTCAGCTGA 1029 0.4801 MALEAVVFPQDPFSYGCKDYLYSLLGGGSAASDSTWNNDYGFQATEEKAILGIINNNIEHNLHANWDSSSSSVLRNVKDQWDSHSSSPEACTVDQSMPRAASPLPPSSTVTTAAAAAATSRRKRRRTKSAKNMEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKKTKEQVQENCSSASSVSPLAEFFMFPQYSTRATQSSTSSYMEQSQNKNQSWAVADIEVTLVDSHANIKILSKKQPGQIMKMVVGLQSLGLGILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVNQLSRTVQGEAAFS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi247g00011 342 SMART finulus 144 195 IPR011598 GO:0046983
Gabi247g00011 342 CDD bHLH_AtFAMA_like 141 205 - -
Gabi247g00011 342 Pfam Helix-loop-helix DNA-binding domain 139 190 IPR011598 GO:0046983
Gabi247g00011 342 MobiDBLite consensus disorder prediction 101 116 - -
Gabi247g00011 342 Gene3D - 128 217 IPR036638 GO:0046983
Gabi247g00011 342 FunFam Basic helix-loop-helix transcription factor 129 204 - -
Gabi247g00011 342 PANTHER MAX DIMERIZATION, MAD 83 336 - -
Gabi247g00011 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 189 IPR011598 GO:0046983
Gabi247g00011 342 Coils Coil 186 209 - -
Gabi247g00011 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 205 IPR036638 GO:0046983
Gabi247g00011 342 MobiDBLite consensus disorder prediction 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi247g00011 Gabi-Chr247 128788 130090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi247g00011 1 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.297 2.28e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi247g00011 HLH 7.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi247g00011 - - gmx:100797856 447.588