Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi247g00010 ATGAGCATCCAAAAGGAGAGTCCTCTCAGACTCAGGCGTTTTGATAATCATGGCAATGCGTGGCTTGTTCTTCTTCTCATACAAATCTCACCGCCGGCAACCGCTCAGACGGCAGCACCACCAGTGGACCCCAACAACAATAAATCCGTGGCGGCCATCATGGGGATCGTGGCCTTTATGTTCCTCATCTCAGGTTTGCTTTCACTCTACTCTCGTAAATGTGGTGACCGGCGAGGACAAATCCGAGGCAGGATAGACCTCACTCTTCCCACCGGAGGAAGCGGTCGCCGGTCGCAAAACGAGCCTCGCGGTCTCAACCAAGAAGTCATAGATACCTTCCCGACGTTCCTCTACTCAAACGTGAAGGATCTCAAGATTGGGAAAGGAACCTTGGCATGCGCCGTGTGCTTGAATGAGTTCCAAGACGATGAAACCCTGCGCATGATCCCAAAGTGTAGCCACGTTTACCACCCAACTTGCATCGATGTTTGGTTGTCCTCTCACTCCACTTGCCCAGTTTGCCGTGCAAACCTTGTTCCAAAACCCGATGACAACAACAACAACAACAACAACATGTGCATGCCTCCGATGGTGTCCATTCAGATTCCGGATGATCATGATTATGATCACGAGCAGCAGCACCACCTAAACGCTGAAGAGAACACTGGAGAGGATCAGAAGAGAGAAAACAACGTCGATTTGGAATCACCAAATGTTGATTTTCTTCGTAGGAGTCGAACGATGAATTACCAGAACCGTCCAACACGGTCGAGGTCAACAGGATTCTTATTTGCTCTCTTGTTTCCGCGGTCAAACTCAACTGGTTCGGTGTTGTTACAGCCTGGTGAGAACTGTGAAAGGTTTACTCTGAGGTTACCTGATGAGGTTCGAAGCCAGATGCTGAACTCAACGTTAAAACGCACGAATAGCTGCGTCAGTTTTACGAGTATGAGCAGTGGGACGAGGGGTTATAGGACAAGAAGCGTTGGGAGTGGACGTGGGTTTGGGTGTGAGGAGCATTGGGGTTTCACTTTGACGCCACCGTTTATTAGGAACAGTTGTAATAGATCGGCTAGAAAATCACCTGTTCAGTGTTCATCAGGAGTTGCTTTGGACAATAATGTTGGTGAGAGATCCTCTGATCTCTTGTGTCCTGGGTAG 1161 0.491 MSIQKESPLRLRRFDNHGNAWLVLLLIQISPPATAQTAAPPVDPNNNKSVAAIMGIVAFMFLISGLLSLYSRKCGDRRGQIRGRIDLTLPTGGSGRRSQNEPRGLNQEVIDTFPTFLYSNVKDLKIGKGTLACAVCLNEFQDDETLRMIPKCSHVYHPTCIDVWLSSHSTCPVCRANLVPKPDDNNNNNNNMCMPPMVSIQIPDDHDYDHEQQHHLNAEENTGEDQKRENNVDLESPNVDFLRRSRTMNYQNRPTRSRSTGFLFALLFPRSNSTGSVLLQPGENCERFTLRLPDEVRSQMLNSTLKRTNSCVSFTSMSSGTRGYRTRSVGSGRGFGCEEHWGFTLTPPFIRNSCNRSARKSPVQCSSGVALDNNVGERSSDLLCPG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi247g00010 386 SMART ring_2 133 174 IPR001841 -
Gabi247g00010 386 SUPERFAMILY RING/U-box 132 188 - -
Gabi247g00010 386 FunFam E3 ubiquitin-protein ligase ATL6 94 181 - -
Gabi247g00010 386 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Gabi247g00010 386 CDD RING-H2_EL5-like 133 175 - -
Gabi247g00010 386 Pfam Ring finger domain 132 175 IPR001841 -
Gabi247g00010 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 181 IPR013083 -
Gabi247g00010 386 PANTHER RING FINGER DOMAIN-CONTAINING 35 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi247g00010 Gabi-Chr247 101301 102461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi247g00010 22 368 Rapid Response to Elicitors AT3G05200 34.043 7.02e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi247g00010 K10664 - gmx:100814384 427.557