Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi247g00009 ATGAGCATCCACACGGAGTCTCCTGCACCTGCTCCCACCACTCCTCTCACACTCGCAGAACTGCCGAATTTTGATTATGGCCGTGCTTTGTTTCCTCTTCTTTTTCTTTTTCTTTTTCTTTTTCTCGTGCCGCCAACCATGGCACAGGCGCTTCCTCCGTCACCGCCACTGCCAGGCCCATTCGCGAGACTGAGGTTCGACAAAACCATGGGTGTAGTCCTTGTGATCCTCGTCGTGGTGTTCTTCATCTTGGGCTTAATCTCAATATACACTCGCCAATGTGTTGAGCGAAGGATTGGTGGCAGGTTTGACCTATCCATCCCCATCATCGGAGGAAGCGAACTCCGGCCACCGCGAGGCCTCGGCAAGGCGATCATCGACACCTTCCCCACCTTCGTATACTCCGAAGTGAAGGCTCTCAAGATAGGGAGGACCACGCTCGAATGCGCCGTGTGCCTCAATGAGTTCCACGACGATGAAACGCTGCGTTTGCTCCCTAAATGCAGCCACGTGTTCCACCCCGATTGCATCGACGTCTGGTTGCTCACTCACTCCACCTGCCCAGTTTGTCGGGCCAACCTCGTACCCAAACCCGGGGACAGCTTTTCTTCCGTCGCAGTCCAGGTACCAGATCATGTTCGACCCGACCCGGAATCCGTAAATGACCCGAATGTTATTACCCGGGTCGATGACGATGGGCCAAACAGAGTAATAACAACAGAGTCTCCGAGGGAGAATTTAGGTGATCAGAGCCGTCCGGTTCGGTCTAGGTCAACAGGATTTGGAATTGCGAGATTGTTCCCACGTTCTCACTCGACGGGTCACTCGCTGGTTCGACCGGGGGAGGATTGCGAGCGGTTCACGCTGAGGTTGCCCGAGCAAGTGCGGAACCTGCTGGTGAATTCAGCCACGTTGAACCGAACGAAGAGTTGCGGCGTGACATTGCAGCGAGAGAGTAGTGGAAGGAGAGGTTACAGGACGAGAAGCACAGGGAGGAGCTATATGCAGTATGAGCGGTTCGGCGGGGAGGTTCGGCCGGACCGGTGGGGGTTCACGTGGACCCCGCCGTTTTTGTTTAGGTCCGGTTCGACGAGCTCAACTAAGGATGCCAACAACGCGAGGGTAGTAATGGAAGAAGTGGAAGTGGGAGAATGTTCTTCTGATTGTTTATTTTCCAAAGAGTGA 1185 0.5451 MSIHTESPAPAPTTPLTLAELPNFDYGRALFPLLFLFLFLFLVPPTMAQALPPSPPLPGPFARLRFDKTMGVVLVILVVVFFILGLISIYTRQCVERRIGGRFDLSIPIIGGSELRPPRGLGKAIIDTFPTFVYSEVKALKIGRTTLECAVCLNEFHDDETLRLLPKCSHVFHPDCIDVWLLTHSTCPVCRANLVPKPGDSFSSVAVQVPDHVRPDPESVNDPNVITRVDDDGPNRVITTESPRENLGDQSRPVRSRSTGFGIARLFPRSHSTGHSLVRPGEDCERFTLRLPEQVRNLLVNSATLNRTKSCGVTLQRESSGRRGYRTRSTGRSYMQYERFGGEVRPDRWGFTWTPPFLFRSGSTSSTKDANNARVVMEEVEVGECSSDCLFSKE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi247g00009 394 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Gabi247g00009 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 196 IPR013083 -
Gabi247g00009 394 SUPERFAMILY RING/U-box 128 198 - -
Gabi247g00009 394 SMART ring_2 149 190 IPR001841 -
Gabi247g00009 394 MobiDBLite consensus disorder prediction 239 256 - -
Gabi247g00009 394 FunFam E3 ubiquitin-protein ligase ATL6 112 197 - -
Gabi247g00009 394 PANTHER RING FINGER DOMAIN-CONTAINING 49 201 - -
Gabi247g00009 394 Pfam Ring finger domain 148 191 IPR001841 -
Gabi247g00009 394 CDD RING-H2_EL5-like 148 191 - -
Gabi247g00009 394 MobiDBLite consensus disorder prediction 212 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi247g00009 Gabi-Chr247 95348 97190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi247g00009 29 368 Rapid Response to Elicitors AT3G05200 40.173 6.24e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi247g00009 K10664 - gmx:100807828 434.491