Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2476g00037 ATGGCAGCTTTTTCATACCAATACGACCCTTTTCTTGTTGACTCGTCCTCATGCTTCACCAATAACCCCATAAATATGTCTTCTTCAGGGGAACAAGCCCATATGAACACTGCCCTTCATCCTCATCATTTTCGTATTCATCAGGATACTTCTTTTAGTGTCACAAATCAAGAAACTAGCCAAAGCTCCAAGATTACCATTAGTGATACCGAGCCTTCTGTGGTCAAAAACCAGAGTCCTGAAACCTCCATGGTTGTGGACAAGCTTGAAAAAGGTGAGCAGGTCACTCAGAAGGTAACTCCTATGGAGAAGAAAAGGAGAGCCACAAATGGATCCAAGGACTCAATAGAAGGGAGAAACAAGAAACAAAAGAAGAGCAATGATGGGGTGAAAGAAGAGAAGGAACAAAAAAATGGTCCTGAAGAGCCTCCAAAAGGTTATGTCCATGTCAGAGCAAGAAGAGGTCAAGCAACGGATAGCCATAGCCTTGCTGAAAGGGTTAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAACGACTTGTGCCAGGTTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTTGAGTTCTTGTCTATGAAACTTGCTTCCGTGAATCCAATGCTCTTTGATTTTGCAATGGACCTGGACACCCTCTTGGTTAAACCAGATCAGAAATTAAATGGCATAGCATCACCATCACTATTACCATCTGTACCACAATGCAGCCCCACCCAAGTCACAGCTTTTGCTGATACAACAACCCTAACCACCACTACCACCAGCTTCCCCGTTGCTAGTTATGACTATCTTTTGGATTATTCATCTTCAGTTTTTCTTCAAGGGCAGATGTCAAATGTCTTTTCTGAGTTCTGGGATATAGAAGACCAACAACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTCATGTTCCTTAAATTAA 993 0.4169 MAAFSYQYDPFLVDSSSCFTNNPINMSSSGEQAHMNTALHPHHFRIHQDTSFSVTNQETSQSSKITISDTEPSVVKNQSPETSMVVDKLEKGEQVTQKVTPMEKKRRATNGSKDSIEGRNKKQKKSNDGVKEEKEQKNGPEEPPKGYVHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMLFDFAMDLDTLLVKPDQKLNGIASPSLLPSVPQCSPTQVTAFADTTTLTTTTTSFPVASYDYLLDYSSSVFLQGQMSNVFSEFWDIEDQQQKFLHPYGFSNNSCSLN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2476g00037 330 Gene3D - 153 225 IPR036638 GO:0046983
Gabi2476g00037 330 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Gabi2476g00037 330 MobiDBLite consensus disorder prediction 56 165 - -
Gabi2476g00037 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 257 IPR024097 GO:0006355
Gabi2476g00037 330 CDD bHLH_AtBPE_like 146 231 - -
Gabi2476g00037 330 MobiDBLite consensus disorder prediction 56 84 - -
Gabi2476g00037 330 MobiDBLite consensus disorder prediction 86 165 - -
Gabi2476g00037 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 223 IPR036638 GO:0046983
Gabi2476g00037 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Gabi2476g00037 330 SMART finulus 162 212 IPR011598 GO:0046983
Gabi2476g00037 330 FunFam Basic helix-loop-helix transcription factor 153 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2476g00037 Gabi-Chr2476 270396 272845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2476g00037 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.682 1.30e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2476g00037 HLH 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2476g00037 - - gmx:100806696 388.267